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Sample GSM116259 Query DataSets for GSM116259
Status Public on Mar 23, 2015
Title Fibrosarcoma induced spontaneously in C3H/He mouse, 9 days after gamma irradiation at 50Gy (g_nfsa_50_9d_3)
Sample type RNA
 
Source name Murine tumor
Organism Mus musculus
Characteristics Fibrosarcoma developed spontaneously in C3H/He mouse etablished by Dr. L. Milas from the University of Texas, M. D. Anderson Cancer Center, Huston, USA
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol CodeLink Gene Expression System: Manual Labelled cRNA Target Preparation
 
Hybridization protocol CodeLink Gene Expression System: Single-Assay Bioarray Hybridization and Detection
Scan protocol Scanning CodeLink Bioarrays on Agilent G2565 microarray scanner
Description 9days after gamma irradiation at 50Gy
Data processing global median normalization
 
Submission date Jun 26, 2006
Last update date Mar 23, 2015
Contact name Kazunori Nojiri
Organization name National Institute of Radiological Sciences
Street address 4-9-1, Anagawa, Inage-ku
City Chiba
ZIP/Postal code 263-8555
Country Japan
 
Platform ID GPL2897
Series (1)
GSE15362 Radiation-induced genes expressed in six murine tumors.

Data table header descriptions
ID_REF
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag; G = Good signal (SNR >= 1)
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1002 762.3217 9.9559 G 7.3544 841.3217 967.0000 312.6129 117 12.2052869796753 114.39644638136 82.7917 79.0000 23.5976 124 9.9559
1003 11.6703 L 0.9894 84.6703 85.0000 10.9806 91 10.7640514373779 85.5776714897116 73.7431 73.0000 8.3851 226 0.1524
1004 41.4588 0.5415 G 1.3368 114.4588 112.0000 16.7294 85 10.4031419754028 85.6219845711919 73.5475 73.0000 8.4147 185 0.5415
1005 5.1444 L 0.9171 79.1444 77.0000 10.0549 90 10.7047443389893 86.2974055733438 73.0053 74.0000 8.1983 195 0.0672
1006 15.2933 0.1997 G 1.0420 86.2933 86.0000 8.7632 75 9.77204990386963 82.8156079550837 70.8696 71.0000 7.8771 94 0.1997
1010 254.6909 3.3263 G 3.8076 328.6909 374.0000 111.2686 112 11.9416427612305 86.3245487814011 73.6606 74.0000 8.2164 113 3.3263
1012 527.3418 6.8871 G 6.9617 601.3418 649.0000 263.1839 79 10.0292530059814 86.3784969586482 73.7473 74.0000 8.2523 188 6.8871
1013 30.2069 0.3945 G 1.1988 102.2069 104.0000 12.1694 58 8.59348011016846 85.2582904658723 72.3791 72.0000 8.8389 188 0.3945
1017 45.4125 0.5931 G 1.3754 117.4125 119.0000 14.4678 80 10.0925302505493 85.364664329207 72.4066 72.0000 8.9098 188 0.5931
1018 14.2745 0.1864 G 1.0221 87.2745 87.0000 9.1482 51 8.0582389831543 85.384186555115 72.9176 73.0000 8.2561 188 0.1864
1019 70.5821 0.9218 G 1.6295 145.5821 146.0000 25.1913 67 9.23618125915527 89.3438452825244 74.6648 75.0000 9.5626 188 0.9218
1020 21.5636 0.2816 G 1.0807 96.5636 95.0000 9.4441 55 8.36828422546387 89.3487772919936 76.0000 75.0000 9.5659 188 0.2816
1024 2.3265 L 0.8762 78.3265 80.0000 11.1911 49 7.89865398406982 89.3915569981061 75.9044 76.0000 8.9277 119 0.0304
1026 274.3103 3.5825 G 3.9932 348.3103 376.0000 116.8484 87 10.5248203277588 87.226579386715 74.9056 74.0000 8.8177 186 3.5825
1027 5.9714 L 0.9230 80.9714 83.0000 11.6091 35 6.67558097839355 87.7284160091113 75.1813 75.0000 8.4856 188 0.0780
1030 42.3636 0.5533 G 1.3379 114.3636 113.0000 15.6478 77 9.90148735046387 85.4825022487734 73.7308 72.0000 8.9883 188 0.5533
1031 85.2683 1.1136 G 1.8439 158.2683 165.0000 28.3136 82 10.2179079055786 85.8321625064827 73.3956 73.0000 8.5548 188 1.1136
1034 174.5584 2.2797 G 2.9228 246.5584 273.0000 74.1489 77 9.90148735046387 84.3562008604464 72.7747 72.0000 8.2375 188 2.2797
1039 38.8590 0.5075 G 1.3128 110.8590 110.0000 13.8080 78 9.96557521820068 84.4460837306664 72.5879 72.0000 8.2974 188 0.5075
1040 10.7692 L 0.9741 84.7692 85.0000 9.6196 39 7.04672574996948 87.0221589611959 74.0275 74.0000 8.6814 188 0.1406

Total number of rows: 36227

Table truncated, full table size 4522 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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