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Sample GSM116262 Query DataSets for GSM116262
Status Public on Mar 23, 2015
Title Mammary Carcinoma induced spontaneously in C3H/He mouse, no irradiation (g_mca4_0_1d_1)
Sample type RNA
 
Source name Murine tumor
Organism Mus musculus
Characteristics Mammary Carcinoma developed spontaneously in C3H/He mouse etablished by National Institute of Radiological Science, Chiba, Japan "
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol CodeLink Gene Expression System: Manual Labelled cRNA Target Preparation
 
Hybridization protocol CodeLink Gene Expression System: Single-Assay Bioarray Hybridization and Detection
Scan protocol Scanning CodeLink Bioarrays on Agilent G2565 microarray scanner
Description no irradiation
Data processing global median normalization
 
Submission date Jun 26, 2006
Last update date Mar 23, 2015
Contact name Kazunori Nojiri
Organization name National Institute of Radiological Sciences
Street address 4-9-1, Anagawa, Inage-ku
City Chiba
ZIP/Postal code 263-8555
Country Japan
 
Platform ID GPL2897
Series (1)
GSE15362 Radiation-induced genes expressed in six murine tumors.

Data table header descriptions
ID_REF
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag; G = Good signal (SNR >= 1)
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 12836.1396 98.5386 G 137.9423 12915.1396 4630.0000 13789.9346 174 14.8843431472778 93.6271110321059 79.6000 79.0000 9.7514 124 98.5386
1002 6165.7949 47.3327 G 65.7029 6245.7949 7769.0000 4182.2656 163 14.4061803817749 95.0612144466312 80.5785 80.0000 10.0408 231 47.3327
1003 71.5189 0.5490 G 1.6041 150.5189 154.0000 23.8989 108 11.7264604568481 93.8350617330926 79.4874 79.0000 9.8900 123 0.5490
1004 71.8868 0.5519 G 1.6587 148.8868 144.0000 24.2632 108 11.7264604568481 89.7628647463446 78.1261 77.0000 8.5086 123 0.5519
1005 12.3333 L 0.9675 91.3333 89.0000 11.3609 33 6.48204469680786 94.3996504736804 78.7486 79.0000 10.2664 181 0.0947
1006 18.9434 0.1454 G 1.0688 98.9434 97.0000 13.5276 53 8.21472454071045 92.5768187582197 79.5659 80.0000 8.3845 188 0.1454
1007 13036.0664 100.0734 G 137.4871 13115.0664 4864.0000 14017.3047 184 15.306079864502 95.3912355960186 79.7000 79.0000 10.9275 124 100.0734
1008 12261.7988 94.1296 G 124.8963 12345.7988 5150.0000 13773.4912 176 14.9696416854858 98.8484002871767 83.6667 84.0000 9.8989 124 94.1296
1010 434.4762 3.3353 G 5.4789 512.4762 560.0000 178.8702 128 12.7661533355713 93.5370141798061 79.3727 78.0000 10.3580 114 3.3353
1012 515.0319 3.9537 G 6.4806 592.0319 691.0000 255.4516 94 10.9400415420532 91.3540904650426 77.3681 77.0000 9.5694 188 3.9537
1013 27.8824 0.2140 G 1.1405 106.8824 105.0000 12.7585 68 9.30485343933105 93.7181148592677 79.3022 79.0000 9.8121 188 0.2140
1014 12084.8135 92.7710 G 131.3097 12162.8135 5414.0000 13387.2793 174 14.8843431472778 92.6269176515101 78.2500 78.0000 9.7513 124 92.7710
1015 12725.2256 97.6872 G 135.6728 12805.2256 5895.0000 13679.7432 166 14.5381488800049 94.3831305880905 79.3500 80.0000 9.5888 124 97.6872
1017 52.9036 0.4061 G 1.4296 130.9036 129.0000 18.5015 83 10.2800235748291 91.5639115975994 77.9780 78.0000 9.0426 188 0.4061
1018 196.4231 1.5079 G 3.0224 272.4231 285.0000 62.9523 106 11.617374420166 90.1332138945976 76.9310 76.0000 9.4221 180 1.5079
1019 120.7901 0.9273 G 2.1680 198.7901 208.0000 53.4237 81 10.1554126739502 91.6923813898564 77.4560 78.0000 9.1283 188 0.9273
1020 35.9000 0.2756 G 1.2549 113.9000 112.0000 14.5741 70 9.44069766998291 90.7643967678056 76.9341 78.0000 8.5096 188 0.2756
1021 13327.6445 102.3117 G 140.3088 13406.6445 5948.0000 13906.8105 165 14.4942932128906 95.5510146243587 79.2750 79.0000 11.0340 124 102.3117
1022 12003.8945 92.1498 G 132.5427 12081.8945 4330.0000 13624.6670 172 14.7985544204712 91.1547063480615 77.8750 78.0000 8.7698 124 92.1498
1024 11.8235 L 0.9697 89.8235 84.0000 23.0708 34 6.57952451705933 92.6289660489881 77.7778 78.0000 9.7526 159 0.0908

Total number of rows: 36227

Table truncated, full table size 4566 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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