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Sample GSM116756 Query DataSets for GSM116756
Status Public on Mar 23, 2015
Title SCC induced spontaneously in C3H/He mouse, 8 days after gamma irradiation at 30Gy (g_nrs1_30_8d_1)
Sample type RNA
 
Source name Murine tumor
Organism Mus musculus
Characteristics Squamous cell carcinoma developed spontaneously in C3H/He mouse etablished by National Institute of Radiological Science, Chiba, Japan
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol CodeLink Gene Expression System: Manual Labelled cRNA Target Preparation
 
Hybridization protocol CodeLink Gene Expression System: Single-Assay Bioarray Hybridization and Detection
Scan protocol Scanning CodeLink Bioarrays on Agilent G2565 microarray scanner
Description 8days after gamma irradiation at 30Gy
Data processing global median normalization
 
Submission date Jun 28, 2006
Last update date Mar 23, 2015
Contact name Kazunori Nojiri
Organization name National Institute of Radiological Sciences
Street address 4-9-1, Anagawa, Inage-ku
City Chiba
ZIP/Postal code 263-8555
Country Japan
 
Platform ID GPL2897
Series (1)
GSE15362 Radiation-induced genes expressed in six murine tumors.

Data table header descriptions
ID_REF
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag; G = Good signal (SNR >= 1)
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1002 1129.2404 15.9108 G 14.0524 1201.2404 1367.0000 579.6205 131 12.9148902893066 85.4829576236995 72.2667 72.0000 8.9886 124 15.9108
1003 19.1538 0.2699 G 1.1025 90.1538 91.0000 13.2899 65 9.09728336334229 81.7689899979489 70.7500 71.0000 7.1793 158 0.2699
1004 57.0645 0.8040 G 1.5446 127.0645 128.0000 20.1344 93 10.8816947937012 82.2660824321436 71.4500 70.0000 8.1774 186 0.8040
1005 197.1515 2.7778 G 3.2798 267.1515 285.0000 70.9416 101 11.3400707244873 81.4528799267261 70.3626 70.0000 7.6353 188 2.7778
1006 12.3243 L 0.9977 83.3243 85.0000 10.4443 37 6.86366271972656 83.5178622871638 70.7500 71.0000 8.3452 186 0.1736
1010 282.2807 3.9773 G 4.3461 352.2807 404.0000 134.5953 116 12.1530151367188 81.0560675354062 70.8710 70.0000 7.3707 95 3.9773
1012 152.3590 2.1467 G 2.6915 222.3590 242.0000 78.2026 78 9.96557521820068 82.6159370856818 70.5769 70.0000 8.4106 188 2.1467
1013 18.4222 0.2596 G 1.0708 91.4222 91.0000 9.7490 45 7.56939744949341 85.3745378545944 72.8389 73.0000 8.2497 186 0.2596
1017 25.6667 0.3616 G 1.1668 96.6667 96.0000 11.4935 66 9.16699600219727 82.8461218525398 70.3462 71.0000 7.8974 188 0.3616
1018 24.8286 0.3498 G 1.1559 95.8286 95.0000 12.4716 70 9.44069766998291 82.9031873554822 71.6000 71.0000 7.9355 181 0.3498
1019 45.6575 0.6433 G 1.4156 116.6575 118.0000 19.1599 73 9.64087581634521 82.4077262619357 70.5714 71.0000 7.6051 188 0.6433
1020 12.0682 0.1700 G 1.0134 83.0682 83.0000 10.6395 44 7.48482084274292 81.9737745632603 70.7484 71.0000 7.3158 165 0.1700
1024 3.9888 L 0.8957 73.9888 74.0000 8.4448 89 10.6451082229614 82.6039796960611 70.4766 70.0000 8.4027 222 0.0562
1026 197.2283 2.7789 G 3.2451 268.2283 281.0000 85.7434 92 10.8230323791504 82.6557641444004 70.5330 71.0000 7.7705 188 2.7789
1027 8.9697 L 0.9598 79.9697 81.0000 9.3306 33 6.48204469680786 83.3194400619871 71.5414 71.0000 8.2130 187 0.1264
1030 21.9048 0.3086 G 1.1231 92.9048 91.0000 10.3934 63 8.95623207092285 82.7222687426834 71.3846 71.0000 7.8148 188 0.3086
1031 20.4643 0.2883 G 1.0942 91.4643 93.0000 10.7918 56 8.444016456604 83.5919470176972 70.6813 71.0000 8.3946 188 0.2883
1034 90.4430 1.2743 G 1.9452 160.4430 162.0000 35.4157 79 10.0292530059814 82.4827831176896 70.8736 70.0000 8.3219 188 1.2743
1039 41.5823 0.5859 G 1.3424 112.5823 113.0000 15.0431 79 10.0292530059814 83.8655314907593 70.4710 71.0000 8.5770 161 0.5859
1040 0.2581 L 0.8599 72.2581 73.0000 9.9870 31 6.2825493812561 84.0261691563186 71.7179 72.0000 8.0174 162 0.0036

Total number of rows: 36227

Table truncated, full table size 4517 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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