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Sample GSM116762 Query DataSets for GSM116762
Status Public on Mar 23, 2015
Title SCC induced spontaneously in C3H/He mouse, 15 days after gamma irradiation at 50Gy (g_nrs1_50_15d_2)
Sample type RNA
 
Source name Murine tumor
Organism Mus musculus
Characteristics Squamous cell carcinoma developed spontaneously in C3H/He mouse etablished by National Institute of Radiological Science, Chiba, Japan
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol CodeLink Gene Expression System: Manual Labelled cRNA Target Preparation
 
Hybridization protocol CodeLink Gene Expression System: Single-Assay Bioarray Hybridization and Detection
Scan protocol Scanning CodeLink Bioarrays on Agilent G2565 microarray scanner
Description 15days after gamma irradiation at 50Gy
Data processing global median normalization
 
Submission date Jun 28, 2006
Last update date Mar 23, 2015
Contact name Kazunori Nojiri
Organization name National Institute of Radiological Sciences
Street address 4-9-1, Anagawa, Inage-ku
City Chiba
ZIP/Postal code 263-8555
Country Japan
 
Platform ID GPL2897
Series (1)
GSE15362 Radiation-induced genes expressed in six murine tumors.

Data table header descriptions
ID_REF
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag; G = Good signal (SNR >= 1)
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1002 1436.6403 16.7976 G 16.3103 1515.6403 1790.0000 824.5915 141 13.3987598419189 92.9252210130242 80.3167 79.0000 9.2835 124 16.7976
1003 16.2250 0.1897 G 1.0453 95.2250 95.0000 12.3582 80 10.0925302505493 91.0986835937901 78.9292 79.0000 8.0658 117 0.1897
1004 46.0833 0.5388 G 1.3791 120.0833 121.0000 16.5162 96 11.0558128356934 87.0753177115056 74.4017 74.0000 8.7169 121 0.5388
1005 310.4286 3.6296 G 4.4047 385.4286 439.0000 136.9306 98 11.1703834533691 87.5047196988019 76.2260 75.0000 8.3365 183 3.6296
1006 17.5714 0.2055 G 1.0687 92.5714 93.0000 7.9128 49 7.89865398406982 86.623532714953 75.1706 75.0000 7.7490 176 0.2055
1010 480.5263 5.6185 G 6.2529 557.5263 644.0000 233.8236 116 12.1530151367188 89.1629512558467 77.9083 77.0000 8.1086 124 5.6185
1012 304.7875 3.5637 G 4.1060 382.7875 422.0000 157.3524 80 10.0925302505493 93.2258049306703 79.3626 78.0000 10.1505 188 3.5637
1013 22.1071 0.2585 G 1.1020 100.1071 98.0000 10.6430 56 8.444016456604 90.843614348011 77.5330 78.0000 8.5624 188 0.2585
1017 61.0333 0.7136 G 1.5255 139.0333 138.0000 16.7852 90 10.7047443389893 91.1386422306261 78.1209 78.0000 8.7591 188 0.7136
1018 30.0845 0.3518 G 1.1995 107.0845 106.0000 14.4727 71 9.50789165496826 89.2755879578083 77.2857 77.0000 8.1837 188 0.3518
1019 140.9747 1.6483 G 2.3655 218.9747 231.0000 60.6261 79 10.0292530059814 92.5693282430838 78.4066 78.0000 9.7129 188 1.6483
1020 20.8723 0.2440 G 1.0870 97.8723 97.0000 13.1854 47 7.73577785491943 90.0399352205018 77.6319 77.0000 8.6933 188 0.2440
1024 7.8778 L 0.9481 80.8778 80.0000 10.6935 90 10.7047443389893 85.3094431539543 73.9792 73.0000 8.2063 198 0.0921
1026 351.9011 4.1145 G 4.9009 426.9011 470.0000 154.6305 91 10.7640514373779 87.1060984627359 75.1978 75.0000 8.0707 188 4.1145
1027 10.7826 L 0.9899 85.7826 88.0000 11.2422 46 7.65303993225098 86.6551084241534 75.0714 75.0000 7.7701 188 0.1261
1030 20.8730 0.2441 G 1.0887 94.8730 94.0000 11.1803 63 8.95623207092285 87.1430490432526 75.0385 74.0000 8.7620 188 0.2441
1031 22.4928 0.2630 G 1.1092 97.4928 97.0000 12.2245 69 9.37302112579346 87.8910661595284 76.1264 75.0000 8.5940 188 0.2630
1034 181.7531 2.1251 G 2.8979 257.7531 273.0000 88.9351 81 10.1554126739502 88.9434318360609 75.6044 76.0000 8.6290 188 2.1251
1039 39.2593 0.4590 G 1.3044 113.2593 112.0000 16.3962 81 10.1554126739502 86.8318914931689 74.4451 74.0000 8.5546 188 0.4590
1040 10.2105 L 0.9884 85.2105 87.0000 10.0162 38 6.95579624176025 86.2110375329187 75.4341 75.0000 7.4740 188 0.1194

Total number of rows: 36227

Table truncated, full table size 4532 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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