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GEO accession:
Sample GSM116999
Query DataSets for GSM116999
Status
Public on Sep 30, 2006
Title
NA18521_Nsp_COMM
Sample type
genomic
Source name
DNA was obtained from NIGHS Human Genetic Cell Repository
Organism
Homo sapiens
Characteristics
Gender: Male Cell lot number: 1
Biomaterial provider
Coriell NA18521
http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA18521
Extracted molecule
genomic DNA
Label
Biotin
Description
Hapmap samples used for identifying variable copy number regions in the genome
Data processing
Genotyes reported by dynamic modeling algorithm
Submission date
Jun 29, 2006
Last update date
Apr 17, 2008
Contact name
Fan Shen
E-mail(s)
Fan_Shen@affymetrix.com
Phone
408-731-5762
Organization name
Affymetrix, Inc
Street address
3420 Central Expressway
City
Santa Clara
State/province
CA
ZIP/Postal code
95051
Country
USA
Platform ID
GPL3718
Series (1)
GSE5173
Global variation of copy number in the human genome_COMM
Data table header descriptions
ID_REF
Affymetrix probe set ID
VALUE
Genotypes
DETECTION P-VALUE
Detection pValue
MedianS
Median signal
RAS1
Relative allele signal for data in the first probe group
RAS2
Relative allele signal for data in the second probe group
Data table
ID_REF
VALUE
DETECTION P-VALUE
MedianS
RAS1
RAS2
SNP_A-1780520
BB
0.023438
11.398
0.000000
0.048587
SNP_A-1780618
AB
0.132813
6.646
0.404000
0.364991
SNP_A-1780632
AB
0.093750
5.728
0.631188
0.532437
SNP_A-1780654
BB
0.023438
11.617
0.063237
0.096854
SNP_A-4192495
BB
0.062500
5.621
0.112091
0.029270
SNP_A-4192498
AB
0.196289
0.201
0.140496
0.395140
SNP_A-1780732
BB
0.015625
13.822
0.000000
0.001196
SNP_A-1780848
AB
0.007813
12.978
0.538828
0.595930
SNP_A-1780985
BB
0.015625
8.338
0.000000
0.000000
SNP_A-1781022
AA
0.015625
9.343
1.000000
1.000000
SNP_A-1781076
BB
0.132813
11.788
0.347134
0.000000
SNP_A-1781249
AB
0.007813
3.830
0.552920
0.480956
SNP_A-1781276
AA
0.062500
5.243
0.844724
0.867171
SNP_A-1781302
BB
0.007813
8.276
0.125995
0.025830
SNP_A-1781510
AA
0.007813
31.312
1.000000
1.000000
SNP_A-4192564
BB
0.007813
5.093
0.070531
0.070370
SNP_A-1781614
AA
0.007813
15.395
0.961988
0.984722
SNP_A-1781633
AA
0.007813
21.428
1.000000
1.000000
SNP_A-1781764
AA
0.062500
5.380
0.990712
0.743390
SNP_A-1781829
AA
0.039063
11.331
0.943715
0.772727
Total number of rows:
262264
Table truncated, full table size
12933 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM116999.CEL.gz
42.9 Mb
(ftp)
(http)
CEL
GSM116999.raw.txt.gz
25.9 Mb
(ftp)
(http)
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