GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM117047
Query DataSets for GSM117047
Status
Public on Sep 30, 2006
Title
NA18612_Nsp_COMM
Sample type
genomic
Source name
DNA was obtained from NIGHS Human Genetic Cell Repository
Organism
Homo sapiens
Characteristics
Gender: Male Cell lot number: 1
Biomaterial provider
Coriell NA18612
http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA18612
Extracted molecule
genomic DNA
Label
Biotin
Description
Hapmap samples used for identifying variable copy number regions in the genome
Data processing
Genotyes reported by dynamic modeling algorithm
Submission date
Jun 29, 2006
Last update date
Apr 17, 2008
Contact name
Fan Shen
E-mail(s)
Fan_Shen@affymetrix.com
Phone
408-731-5762
Organization name
Affymetrix, Inc
Street address
3420 Central Expressway
City
Santa Clara
State/province
CA
ZIP/Postal code
95051
Country
USA
Platform ID
GPL3718
Series (1)
GSE5173
Global variation of copy number in the human genome_COMM
Data table header descriptions
ID_REF
Affymetrix probe set ID
VALUE
Genotypes
DETECTION P-VALUE
Detection pValue
MedianS
Median signal
RAS1
Relative allele signal for data in the first probe group
RAS2
Relative allele signal for data in the second probe group
Data table
ID_REF
VALUE
DETECTION P-VALUE
MedianS
RAS1
RAS2
SNP_A-1780520
BB
0.007813
25.715
0.009554
0.009804
SNP_A-1780618
BB
0.007813
17.326
0.033297
0.028966
SNP_A-1780632
AB
0.062500
10.306
0.590344
0.611449
SNP_A-1780654
AA
0.007813
33.147
1.000000
1.000000
SNP_A-4192495
AA
0.093750
6.749
0.692771
0.976271
SNP_A-4192498
BB
0.000488
14.207
0.000000
0.000000
SNP_A-1780732
AA
0.015625
23.714
0.963134
1.000000
SNP_A-1780848
BB
0.062500
8.607
0.000000
0.229968
SNP_A-1780985
AB
0.023438
6.273
0.571637
0.386364
SNP_A-1781022
AB
0.250000
0.250
0.543103
0.733463
SNP_A-1781076
AB
0.023438
14.894
0.535124
0.596923
SNP_A-1781249
AA
0.007813
7.737
0.849777
0.917607
SNP_A-1781276
BB
0.023438
10.843
0.000000
0.000000
SNP_A-1781302
BB
0.007813
23.952
0.163860
0.000000
SNP_A-1781510
AA
0.007813
24.217
0.964372
1.000000
SNP_A-4192564
BB
0.007813
10.353
0.101735
0.000000
SNP_A-1781614
BB
0.007813
16.875
0.040238
0.041754
SNP_A-1781633
AB
0.023438
11.725
0.443004
0.395135
SNP_A-1781764
AB
0.007813
16.375
0.504165
0.431881
SNP_A-1781829
AA
0.007813
12.382
0.940959
0.887897
Total number of rows:
262264
Table truncated, full table size
12989 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM117047.CEL.gz
44.1 Mb
(ftp)
(http)
CEL
GSM117047.raw.txt.gz
26.8 Mb
(ftp)
(http)
TXT
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
