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GEO accession:
Sample GSM117123
Query DataSets for GSM117123
Status
Public on Sep 30, 2006
Title
NA19000_Nsp_COMM
Sample type
genomic
Source name
DNA was obtained from NIGHS Human Genetic Cell Repository
Organism
Homo sapiens
Characteristics
Gender: Male Cell lot number: 2
Biomaterial provider
Coriell NA19000
http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA19000
Extracted molecule
genomic DNA
Label
Biotin
Description
Hapmap samples used for identifying variable copy number regions in the genome
Data processing
Genotyes reported by dynamic modeling algorithm
Submission date
Jun 29, 2006
Last update date
Apr 17, 2008
Contact name
Fan Shen
E-mail(s)
Fan_Shen@affymetrix.com
Phone
408-731-5762
Organization name
Affymetrix, Inc
Street address
3420 Central Expressway
City
Santa Clara
State/province
CA
ZIP/Postal code
95051
Country
USA
Platform ID
GPL3718
Series (1)
GSE5173
Global variation of copy number in the human genome_COMM
Data table header descriptions
ID_REF
Affymetrix probe set ID
VALUE
Genotypes
DETECTION P-VALUE
Detection pValue
MedianS
Median signal
RAS1
Relative allele signal for data in the first probe group
RAS2
Relative allele signal for data in the second probe group
Data table
ID_REF
VALUE
DETECTION P-VALUE
MedianS
RAS1
RAS2
SNP_A-1780520
BB
0.007813
20.635
0.051724
0.000000
SNP_A-1780618
BB
0.007813
7.430
0.103896
0.081272
SNP_A-1780632
AB
0.187500
1.394
0.761438
0.487097
SNP_A-1780654
AA
0.007813
25.138
1.000000
0.977941
SNP_A-4192495
AB
0.046875
2.309
0.317073
0.385122
SNP_A-4192498
BB
0.000488
15.313
0.000000
0.000000
SNP_A-1780732
BB
0.015625
12.921
0.000000
0.000000
SNP_A-1780848
AB
0.007813
12.442
0.586412
0.572485
SNP_A-1780985
AB
0.062500
5.948
0.374317
0.490323
SNP_A-1781022
BB
0.500000
0.000
0.000000
0.000000
SNP_A-1781076
AB
0.007813
8.178
0.522541
0.555556
SNP_A-1781249
AB
0.007813
8.813
0.597291
0.501955
SNP_A-1781276
AA
0.039063
7.764
0.974522
0.879185
SNP_A-1781302
BB
0.023438
9.338
0.106383
0.000000
SNP_A-1781510
BB
0.023438
10.200
0.032258
0.222222
SNP_A-4192564
BB
0.023438
10.532
0.124183
0.051195
SNP_A-1781614
AA
0.023438
12.464
0.925373
0.929461
SNP_A-1781633
AB
0.023438
12.844
0.434000
0.476190
SNP_A-1781764
AA
0.007813
18.928
0.981375
0.906849
SNP_A-1781829
AA
0.007813
6.691
0.947674
0.816252
Total number of rows:
262264
Table truncated, full table size
12939 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM117123.CEL.gz
39.4 Mb
(ftp)
(http)
CEL
GSM117123.raw.txt.gz
11.4 Mb
(ftp)
(http)
TXT
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