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GEO accession:
Sample GSM117199
Query DataSets for GSM117199
Status
Public on Sep 30, 2006
Title
NA19239_Nsp_COMM
Sample type
genomic
Source name
DNA was obtained from NIGHS Human Genetic Cell Repository
Organism
Homo sapiens
Characteristics
Gender: Male Cell lot number: 1
Biomaterial provider
Coriell NA19239
http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA19239
Extracted molecule
genomic DNA
Label
Biotin
Description
Hapmap samples used for identifying variable copy number regions in the genome
Data processing
Genotyes reported by dynamic modeling algorithm
Submission date
Jun 29, 2006
Last update date
Apr 17, 2008
Contact name
Fan Shen
E-mail(s)
Fan_Shen@affymetrix.com
Phone
408-731-5762
Organization name
Affymetrix, Inc
Street address
3420 Central Expressway
City
Santa Clara
State/province
CA
ZIP/Postal code
95051
Country
USA
Platform ID
GPL3718
Series (1)
GSE5173
Global variation of copy number in the human genome_COMM
Data table header descriptions
ID_REF
Affymetrix probe set ID
VALUE
Genotypes
DETECTION P-VALUE
Detection pValue
MedianS
Median signal
RAS1
Relative allele signal for data in the first probe group
RAS2
Relative allele signal for data in the second probe group
Data table
ID_REF
VALUE
DETECTION P-VALUE
MedianS
RAS1
RAS2
SNP_A-1780520
BB
0.023438
6.981
0.200393
0.000000
SNP_A-1780618
BB
0.007813
17.850
0.033435
0.121125
SNP_A-1780632
AA
0.023438
9.886
0.982699
0.828883
SNP_A-1780654
AA
0.007813
30.011
0.985524
1.000000
SNP_A-4192495
BB
0.007813
8.983
0.037791
0.000000
SNP_A-4192498
BB
0.000488
10.854
0.000000
0.000000
SNP_A-1780732
BB
0.015625
11.295
0.000000
0.000000
SNP_A-1780848
AB
0.039063
7.245
0.540632
0.741780
SNP_A-1780985
BB
0.007813
10.384
0.000000
0.000000
SNP_A-1781022
AA
0.007813
9.365
0.984263
1.000000
SNP_A-1781076
AB
0.023438
4.348
0.603154
0.458167
SNP_A-1781249
AB
0.007813
4.279
0.558730
0.468862
SNP_A-1781276
AA
0.039063
11.337
1.000000
0.913433
SNP_A-1781302
BB
0.023438
12.452
0.158768
0.043517
SNP_A-1781510
AA
0.007813
22.869
0.977008
1.000000
SNP_A-4192564
AB
0.359375
-0.455
0.489609
0.210345
SNP_A-1781614
AB
0.062500
8.989
0.680079
0.592000
SNP_A-1781633
AA
0.007813
17.214
1.000000
1.000000
SNP_A-1781764
AA
0.062500
4.493
0.900250
0.740850
SNP_A-1781829
AB
0.007813
14.237
0.471831
0.476779
Total number of rows:
262264
Table truncated, full table size
12922 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM117199.CEL.gz
43.4 Mb
(ftp)
(http)
CEL
GSM117199.raw.txt.gz
13.0 Mb
(ftp)
(http)
TXT
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