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GEO accession:
Sample GSM123489
Query DataSets for GSM123489
Status
Public on Mar 23, 2015
Title
1351_p_1
Sample type
RNA
Source name
biopsy, prior to treatment, chemoradiotherapy
Organism
Homo sapiens
Characteristics
female, cervical cancer
Extracted molecule
total RNA
Extraction protocol
ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label
Cy5
Label protocol
http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
Hybridization protocol
http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol
http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description
prior to treatment, chemoradiotherapy
Data processing
global median normalization
Submission date
Jul 28, 2006
Last update date
Mar 23, 2015
Contact name
Shuhei Noda
E-mail(s)
s_noda@nirs.go.jp
Organization name
National institute of radiological sciences
Department
Frontier research center
Street address
Anagawa 4-9-1
City
Chiba
State/province
Chiba
ZIP/Postal code
2658333
Country
Japan
Platform ID
GPL2895
Series (1)
GSE6213
Cervical cancer samples in NIRS
Data table header descriptions
ID_REF
Array
Logical array
Raw_intensity
Raw signal intensity value
VALUE
Median normalized signal intensity value
Quality_flag
CodeLink quality flag
Signal_strength
Signal strength
Spot_mean
Spot median
Spot_median
Spot median
Spot_stdev
Spot standard deviation
Spot_area
Spot area
Spot_diameter
Spot diameter
Spot_noise_level
Spot noise level
Bkgd_mean
Background mean
Bkgd_median
Background median
Bkgd_stdev
Background standard deviation
Bkgd_area
Background area
Data table
ID_REF
Array
Raw_intensity
VALUE
Quality_flag
Signal_strength
Spot_mean
Spot_median
Spot_stdev
Spot_area
Spot_diameter
Spot_noise_level
Bkgd_mean
Bkgd_median
Bkgd_stdev
Bkgd_area
1001
1
13302.9463
165.1746
G
142.3064
13381.9463
8077.0000
13309.4414
189
15.5126485824585
94.0361847695774
80.0167
79.0000
10.0241
124
1002
1
1111.5189
13.8011
G
12.8412
1187.5189
1342.0000
624.2404
108
11.7264604568481
92.4773378491525
76.4333
76.0000
10.9849
186
1003
1
9.0286
0.1121
L
0.8793
95.0286
97.0000
15.6232
35
6.67558097839355
108.076080023683
87.7840
86.0000
14.7174
168
1004
1
28.2787
0.3511
G
1.1079
109.2787
109.0000
13.3688
61
8.81292343139648
98.6328275819327
80.5556
81.0000
11.7552
168
1005
1
8.4848
0.1054
L
0.8892
82.4848
83.0000
10.5288
33
6.48204469680786
92.7603161931344
76.1834
74.0000
12.5069
175
1006
1
18.4194
0.2287
G
1.0028
92.4194
98.0000
12.4273
31
6.2825493812561
92.1599482657372
75.6723
74.0000
12.1066
183
1007
1
28.9538
0.3595
G
1.1524
104.9538
104.0000
13.6950
65
9.09728336334229
91.0774456012932
75.5769
76.0000
10.0516
188
1008
1
12532.5479
155.6091
G
134.3801
12610.5479
4312.0000
13463.9551
192
15.6352806091309
93.8423463764161
78.9911
78.0000
10.5616
233
1009
1
439.0721
5.4517
G
5.5657
516.0721
560.0000
208.3405
97
11.1132459640503
92.7243070383846
77.0994
77.0000
10.4829
187
1010
1
730.8737
9.0748
G
9.0482
804.8737
929.0000
394.9236
95
10.9980792999268
88.9541147635774
74.3791
74.0000
9.9694
188
1011
1
165.8571
2.0593
G
2.7221
239.8571
249.0000
64.9863
91
10.7640514373779
88.1147597512655
74.0659
74.0000
9.4098
188
1012
1
137.0128
1.7012
G
2.3514
211.0128
220.0000
51.3169
78
9.96557521820068
89.7405225370358
74.5275
74.0000
10.4937
188
1013
1
41.0685
0.5099
G
1.2876
116.0685
115.0000
16.1562
73
9.64087581634521
90.1442525619717
74.8297
75.0000
10.0962
188
1014
1
109.8171
1.3635
G
2.0724
182.8171
187.0000
40.6031
82
10.2179079055786
88.2166382942545
73.5000
73.0000
10.1444
188
1015
1
13605.6934
168.9337
G
145.7111
13683.6934
5763.0000
14416.2598
229
17.075475692749
93.9097295358573
78.6637
78.0000
10.6065
234
1016
1
56.9259
0.7068
G
1.4612
133.9259
131.0000
22.5141
81
10.1554126739502
91.6535372841461
77.2778
77.0000
9.7690
186
1017
1
18.8772
0.2344
G
1.0357
93.8772
95.0000
11.9869
57
8.51907634735107
90.6405265559834
75.5424
75.0000
10.4270
183
1018
1
10.7568
0.1336
L
0.9365
85.7568
83.0000
12.4995
37
6.86366271972656
91.5725253339932
75.4885
75.0000
11.0483
180
1019
1
9.6829
0.1202
L
0.9200
88.6829
91.0000
14.3585
41
7.22515201568604
96.3977224819611
79.5055
79.0000
11.5985
188
1020
1
51.1429
0.6350
G
1.2336
136.1429
137.0000
26.5649
70
9.44069766998291
110.36068653383
88.0179
85.0000
16.9071
174
Total number of rows:
54359
Table truncated, full table size
6585 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM123489.TXT.gz
2.6 Mb
(ftp)
(http)
TXT
Processed data included within Sample table
Processed data provided as supplementary file
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