|
| Status |
Public on Aug 04, 2015 |
| Title |
YCC1 Cell Line (Sty) |
| Sample type |
genomic |
| |
|
| Source name |
YCC1 Cell Line (Sty)
|
| Organism |
Homo sapiens |
| Characteristics |
cell line: YCC1
sample type: Gastric Cell Line (YCC1)
|
| Treatment protocol |
None
|
| Growth protocol |
All gastric cancer cell lines were grown in standard conditions.
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Genomic DNA was extracted using Qiagen DNA extraction kit according to manufacturer's instruction
|
| Label |
biotin
|
| Label protocol |
As per the protocol specified for 500K SNP arrays by Affymetrix.
|
| |
|
| Hybridization protocol |
As per the protocol specified for 500K SNP arrays by Affymetrix.
|
| Scan protocol |
GeneChips were scanned using Affymetrix GeneChip Scanner GCS3000
|
| Description |
Hybridized to 250K_Sty
|
| Data processing |
The data was analyzed using dChip software for normalization and copy number estimation.
|
| |
|
| Submission date |
Sep 21, 2013 |
| Last update date |
Aug 04, 2015 |
| Contact name |
Muthulakshmi Muthuswami |
| Organization name |
Duke NUS Graduate Medical School
|
| Department |
Cancer and Stem cell Biology
|
| Street address |
8 College Road
|
| City |
Singapore |
| ZIP/Postal code |
169857 |
| Country |
Singapore |
| |
|
| Platform ID |
GPL3720 |
| Series (1) |
| GSE51074 |
Genome-wide copy number profiling of 18 gastric cancer cell lines using 500K SNP arrays |
|
