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Sample GSM128505 Query DataSets for GSM128505
Status Public on Apr 30, 2007
Title 1676_p_2
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (2)
GSE3578 Activated Cell Death Pathway
GSE20167 Gene expression profiles of cervical cancers for novel molecular classification

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 11873.3643 119.6310 G 127.8942 11952.3643 8380.0000 11350.8848 172 14.7985544204712 93.4550787608039 78.3167 79.0000 9.6367 124 119.6310
1002 1 837.5888 8.4392 G 9.8899 915.5888 1007.0000 486.6081 109 11.7806243896484 92.5780214473448 77.3250 78.0000 9.7187 124 8.4392
1003 1 13.0909 0.1319 L 0.9893 95.0909 88.0000 31.7112 66 9.16699600219727 96.1178882295106 82.2924 82.0000 9.4119 110 0.1319
1004 1 16.6579 0.1678 G 1.0257 94.6579 96.0000 13.6194 38 6.95579624176025 92.2886456262824 78.4341 78.0000 9.5258 188 0.1678
1005 1 8.3393 0.0840 L 0.9360 85.3393 82.0000 14.0233 56 8.444016456604 91.1755907269807 77.4696 77.0000 9.4504 119 0.0840
1006 1 22.1452 0.2231 G 1.0933 99.1452 99.0000 10.2073 62 8.88486671447754 90.6859207665643 77.2363 77.0000 9.1239 188 0.2231
1007 1 37.7568 0.3804 G 1.2639 115.7568 117.0000 15.7247 74 9.70668506622314 91.5857742594458 78.0220 78.0000 9.0572 188 0.3804
1008 1 11649.5371 117.3759 G 129.8700 11726.5371 7920.0000 11537.2041 179 15.0966844558716 90.294418822532 77.5321 77.0000 8.8629 226 117.3759
1009 1 516.4445 5.2035 G 6.5760 592.4445 633.0000 256.3362 99 11.2272310256958 90.0924842204414 77.1593 76.0000 9.3950 188 5.2035
1010 1 456.8495 4.6030 G 6.0318 531.8495 590.0000 238.0438 93 10.8816947937012 88.1737030364639 76.1989 75.0000 8.7825 187 4.6030
1011 1 296.5111 2.9875 G 4.1069 374.5111 387.0000 129.0643 90 10.7047443389893 91.1898325251635 78.1758 78.0000 8.7932 188 2.9875
1012 1 30.5455 0.3078 G 1.1867 106.5455 106.0000 15.9271 66 9.16699600219727 89.7862316161697 75.9176 76.0000 9.1908 188 0.3078
1013 1 17.4510 0.1758 G 1.0583 95.4510 93.0000 14.2956 51 8.0582389831543 90.1897151621059 77.7802 78.0000 8.1265 188 0.1758
1014 1 17.2131 0.1734 G 1.0386 95.2131 96.0000 12.4111 61 8.81292343139648 91.6775419797507 79.2308 78.0000 9.1184 188 0.1734
1015 1 11541.1426 116.2837 G 125.5095 11619.1426 7183.0000 11591.8281 177 15.0121088027954 92.5758364575529 77.6947 78.0000 9.7172 234 116.2837
1016 1 89.3132 0.8999 G 1.7922 168.3132 167.0000 30.3505 83 10.2800235748291 93.9139424418742 79.8722 79.0000 9.9426 186 0.8999
1017 1 51.8519 0.5224 G 1.4100 129.8519 128.0000 18.7985 81 10.1554126739502 92.0904079829995 79.1868 78.0000 9.3936 188 0.5224
1018 1 13.9524 0.1406 G 1.0015 92.9524 95.0000 14.4353 42 7.3127326965332 92.8156423916012 79.0864 79.0000 9.2104 168 0.1406
1019 1 16.4951 0.1662 G 1.0335 97.4951 97.0000 15.7381 105 11.562445640564 94.3348881094118 81.5633 81.0000 8.8899 164 0.1662
1020 1 28.2253 0.2844 G 1.1109 115.2253 115.0000 13.7996 71 9.50789165496826 103.721938839293 87.8800 87.0000 11.1480 181 0.2844

Total number of rows: 54359

Table truncated, full table size 6953 Kbytes.




Supplementary file Size Download File type/resource
GSM128505.TXT.gz 2.6 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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