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GEO accession:
Sample GSM128515
Query DataSets for GSM128515
Status
Public on Mar 23, 2015
Title
1846_d_1
Sample type
RNA
Source name
biopsy, during treatment, chemoradiotherapy
Organism
Homo sapiens
Characteristics
female, cervical cancer
Extracted molecule
total RNA
Extraction protocol
ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label
Cy5
Label protocol
http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
Hybridization protocol
http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol
http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description
during treatment, chemoradiotherapy
Data processing
global median normalization
Submission date
Aug 15, 2006
Last update date
Mar 23, 2015
Contact name
Shuhei Noda
E-mail(s)
s_noda@nirs.go.jp
Organization name
National institute of radiological sciences
Department
Frontier research center
Street address
Anagawa 4-9-1
City
Chiba
State/province
Chiba
ZIP/Postal code
2658333
Country
Japan
Platform ID
GPL2895
Series (1)
GSE6213
Cervical cancer samples in NIRS
Data table header descriptions
ID_REF
Array
Logical array
Raw_intensity
Raw signal intensity value
VALUE
Median normalized signal intensity value
Quality_flag
CodeLink quality flag
Signal_strength
Signal strength
Spot_mean
Spot median
Spot_median
Spot median
Spot_stdev
Spot standard deviation
Spot_area
Spot area
Spot_diameter
Spot diameter
Spot_noise_level
Spot noise level
Bkgd_mean
Background mean
Bkgd_median
Background median
Bkgd_stdev
Background standard deviation
Bkgd_area
Background area
Data table
ID_REF
Array
Raw_intensity
VALUE
Quality_flag
Signal_strength
Spot_mean
Spot_median
Spot_stdev
Spot_area
Spot_diameter
Spot_noise_level
Bkgd_mean
Bkgd_median
Bkgd_stdev
Bkgd_area
1001
1
15205.3818
132.9262
G
169.1424
15283.3818
4046.0000
17217.5820
154
14.0028171539307
90.358094974846
78.3000
78.0000
8.2387
124
1002
1
1204.6932
10.5315
G
14.0287
1281.6932
1529.0000
704.1468
88
10.5851345062256
91.3620575132128
78.1319
77.0000
9.5747
188
1003
1
4.7912
0.0419
L
0.9044
84.7912
84.0000
10.6694
91
10.7640514373779
93.7491068016983
80.0622
80.0000
9.1661
199
1004
1
1.7576
0.0154
L
0.8560
79.7576
78.0000
10.6145
33
6.48204469680786
93.1745754325403
78.9171
78.0000
10.1164
187
1005
1
11.2500
0.0983
L
0.9744
88.2500
91.0000
13.7200
40
7.13649654388428
90.5693709133075
77.5402
77.0000
9.0462
180
1006
1
24.5918
0.2150
G
1.1262
102.5918
101.0000
10.7910
49
7.89865398406982
91.0955285953433
78.7527
78.0000
8.7304
188
1007
1
18.4468
0.1613
G
1.0598
96.4468
96.0000
11.4943
47
7.73577785491943
91.0070465533261
79.1648
78.0000
8.6714
188
1008
1
18116.1699
158.3725
G
191.7297
18198.1699
7515.0000
19490.9121
160
14.2729930877686
94.915770832385
81.9750
82.0000
8.6105
124
1009
1
364.5555
3.1870
G
4.7298
444.5555
482.0000
172.3946
90
10.7047443389893
93.9900485334365
80.1538
80.0000
9.3267
188
1010
1
580.8095
5.0775
G
7.1814
657.8095
811.0000
332.2106
84
10.3417663574219
91.5993448000626
78.0385
77.0000
9.7329
188
1011
1
62.1250
0.5431
G
1.5245
141.1250
142.0000
22.5203
72
9.57461452484131
92.5743527377507
79.4396
79.0000
9.0496
188
1012
1
56.8657
0.4971
G
1.4669
135.8657
136.0000
23.3627
67
9.23618125915527
92.6217671134366
79.1000
79.0000
9.0812
186
1013
1
34.3429
0.3002
G
1.2307
113.3429
112.0000
14.1642
70
9.44069766998291
92.0995248410591
78.8729
79.0000
8.7330
187
1014
1
28.0000
0.2448
G
1.1518
108.0000
107.0000
11.6149
64
9.02703380584717
93.7670813946219
79.6154
80.0000
9.1781
188
1015
1
17606.7090
153.9188
G
190.4148
17685.7090
13333.0000
17533.6875
126
12.6660251617432
92.8799098391028
79.5220
79.0000
9.2533
188
1016
1
55.1270
0.4819
G
1.4270
133.1270
132.0000
20.9629
63
8.95623207092285
93.2934779948123
79.6868
78.0000
10.1957
188
1017
1
25.2000
0.2203
G
1.1178
105.2000
105.0000
12.6665
50
7.97884559631348
94.1164156434247
79.9945
80.0000
9.4109
188
1018
1
3.2857
0.0287
L
0.8996
81.2857
80.0000
11.0984
35
6.67558097839355
90.3612073640237
78.3571
78.0000
8.2408
188
1019
1
12.0606
0.1054
L
0.9693
91.0606
93.0000
11.2464
33
6.48204469680786
93.9450251846302
80.1319
79.0000
9.9633
188
1020
1
18.1190
0.1584
G
1.0469
96.1190
94.0000
10.8676
42
7.3127326965332
91.8169675514504
79.6978
78.0000
9.2113
188
Total number of rows:
54359
Table truncated, full table size
6576 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM128515.TXT.gz
2.6 Mb
(ftp)
(http)
TXT
Processed data included within Sample table
Processed data provided as supplementary file
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