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GEO accession:
Sample GSM128518
Query DataSets for GSM128518
Status
Public on Mar 23, 2015
Title
1850_p_2
Sample type
RNA
Source name
biopsy, prior to treatment, chemoradiotherapy
Organism
Homo sapiens
Characteristics
female, cervical cancer
Extracted molecule
total RNA
Extraction protocol
ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label
Cy5
Label protocol
http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
Hybridization protocol
http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol
http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description
prior to treatment, chemoradiotherapy
Data processing
global median normalization
Submission date
Aug 15, 2006
Last update date
Mar 23, 2015
Contact name
Shuhei Noda
E-mail(s)
s_noda@nirs.go.jp
Organization name
National institute of radiological sciences
Department
Frontier research center
Street address
Anagawa 4-9-1
City
Chiba
State/province
Chiba
ZIP/Postal code
2658333
Country
Japan
Platform ID
GPL2895
Series (1)
GSE6213
Cervical cancer samples in NIRS
Data table header descriptions
ID_REF
Array
Logical array
Raw_intensity
Raw signal intensity value
VALUE
Median normalized signal intensity value
Quality_flag
CodeLink quality flag
Signal_strength
Signal strength
Spot_mean
Spot median
Spot_median
Spot median
Spot_stdev
Spot standard deviation
Spot_area
Spot area
Spot_diameter
Spot diameter
Spot_noise_level
Spot noise level
Bkgd_mean
Background mean
Bkgd_median
Background median
Bkgd_stdev
Background standard deviation
Bkgd_area
Background area
Data table
ID_REF
Array
Raw_intensity
VALUE
Quality_flag
Signal_strength
Spot_mean
Spot_median
Spot_stdev
Spot_area
Spot_diameter
Spot_noise_level
Bkgd_mean
Bkgd_median
Bkgd_stdev
Bkgd_area
1001
1
14258.9795
172.8927
G
146.2850
14337.9795
6569.0000
15546.5869
145
13.5874843597412
98.0139975915139
79.4500
79.0000
12.6760
124
1002
1
1113.5699
13.5022
G
13.3107
1188.5699
1440.0000
677.2672
93
10.8816947937012
89.2942499161012
75.4530
75.0000
9.5295
187
1003
1
15.9487
0.1934
G
1.0049
92.9487
93.0000
12.7721
39
7.04672574996948
92.4992201079748
77.2632
77.0000
10.3328
177
1004
1
32.1961
0.3904
G
1.1790
108.1961
107.0000
13.1403
51
8.0582389831543
91.7712513643881
76.0726
76.0000
10.5142
185
1005
1
5.6452
0.0684
L
0.9077
80.6452
81.0000
8.1658
31
6.2825493812561
88.845480330497
75.1111
75.0000
9.2303
186
1006
1
18.8980
0.2291
G
1.0473
94.8980
95.0000
11.5939
49
7.89865398406982
90.6145168219174
75.6264
76.0000
9.7430
188
1007
1
22.0488
0.2673
G
1.0817
96.0488
96.0000
9.8475
41
7.22515201568604
88.7954267657985
74.5549
74.0000
9.8636
188
1008
1
16029.7988
194.3643
G
160.3418
16110.7988
7923.0000
17679.8027
156
14.093451499939
100.477858395557
80.3167
81.0000
12.9852
124
1009
1
438.4091
5.3158
G
5.6721
514.4091
574.0000
206.6656
88
10.5851345062256
90.6916860961018
75.3371
76.0000
9.7945
184
1010
1
1589.2500
19.2699
G
18.4610
1664.2500
2060.0000
1043.5021
96
11.0558128356934
90.1493811173053
75.8222
75.0000
10.0996
186
1011
1
103.8312
1.2590
G
1.9664
179.8312
191.0000
44.0208
77
9.90148735046387
91.450608813681
76.0141
76.0000
10.3004
146
1012
1
294.8766
3.5754
G
4.1104
370.8766
425.0000
156.0268
81
10.1554126739502
90.2283586255411
76.0440
76.0000
9.4856
188
1013
1
72.7105
0.8816
G
1.6307
147.7105
147.0000
29.4979
76
9.83698177337646
90.5828560517189
75.3242
75.0000
10.3886
188
1014
1
122.2250
1.4820
G
2.1985
199.2250
204.0000
47.6700
80
10.0925302505493
90.6167524421002
76.1264
77.0000
9.0778
188
1015
1
13342.2168
161.7768
G
144.9299
13419.2168
3592.0000
15210.3418
145
13.5874843597412
92.5910850203503
77.1167
77.0000
10.3941
124
1016
1
53.9375
0.6540
G
1.4268
130.9375
130.0000
19.8352
64
9.02703380584717
91.7681502380335
76.5989
77.0000
9.8454
188
1017
1
11.5676
0.1403
L
0.9601
88.5676
88.0000
12.0910
37
6.86366271972656
92.2439659865251
76.3791
77.0000
10.1626
188
1018
1
16.1667
0.1960
G
1.0217
92.1667
92.0000
15.3327
42
7.3127326965332
90.2114921842767
77.2363
76.0000
9.4743
188
1019
1
16.9767
0.2058
G
1.0154
92.9767
95.0000
12.6335
43
7.3992772102356
91.5622291608287
77.4066
76.0000
10.3748
188
1020
1
39.3864
0.4776
G
1.1976
118.3864
102.0000
72.5688
44
7.48482084274292
98.8551408623151
80.4286
79.0000
13.2368
188
Total number of rows:
54359
Table truncated, full table size
6563 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM128518.TXT.gz
2.6 Mb
(ftp)
(http)
TXT
Processed data included within Sample table
Processed data provided as supplementary file
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