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GEO accession:
Sample GSM128522
Query DataSets for GSM128522
Status
Public on Mar 23, 2015
Title
1986_p_2
Sample type
RNA
Source name
biopsy, prior to treatment, chemoradiotherapy
Organism
Homo sapiens
Characteristics
female, cervical cancer
Extracted molecule
total RNA
Extraction protocol
ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label
Cy5
Label protocol
http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
Hybridization protocol
http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol
http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description
prior to treatment, chemoradiotherapy
Data processing
global median normalization
Submission date
Aug 15, 2006
Last update date
Mar 23, 2015
Contact name
Shuhei Noda
E-mail(s)
s_noda@nirs.go.jp
Organization name
National institute of radiological sciences
Department
Frontier research center
Street address
Anagawa 4-9-1
City
Chiba
State/province
Chiba
ZIP/Postal code
2658333
Country
Japan
Platform ID
GPL2895
Series (1)
GSE6213
Cervical cancer samples in NIRS
Data table header descriptions
ID_REF
Array
Logical array
Raw_intensity
Raw signal intensity value
VALUE
Median normalized signal intensity value
Quality_flag
CodeLink quality flag
Signal_strength
Signal strength
Spot_mean
Spot median
Spot_median
Spot median
Spot_stdev
Spot standard deviation
Spot_area
Spot area
Spot_diameter
Spot diameter
Spot_noise_level
Spot noise level
Bkgd_mean
Background mean
Bkgd_median
Background median
Bkgd_stdev
Background standard deviation
Bkgd_area
Background area
Data table
ID_REF
Array
Raw_intensity
VALUE
Quality_flag
Signal_strength
Spot_mean
Spot_median
Spot_stdev
Spot_area
Spot_diameter
Spot_noise_level
Bkgd_mean
Bkgd_median
Bkgd_stdev
Bkgd_area
1001
1
18504.3672
161.5613
G
145.2016
18613.3672
10086.0000
19413.3125
163
14.4061803817749
128.1897818764
110.0333
109.0000
12.7932
124
1002
1
1283.6200
11.2073
G
11.0977
1391.6200
1591.0000
664.5692
102
11.396071434021
125.397583619195
108.9116
108.0000
11.5984
187
1003
1
20.6078
0.1799
L
0.9945
129.6078
132.0000
12.5917
51
8.0582389831543
130.322004823654
110.3681
109.0000
14.2147
188
1004
1
95.0182
0.8296
G
1.6131
201.0182
140.0000
206.6842
55
8.36828422546387
124.613518784925
106.9945
106.0000
12.4090
188
1005
1
32.2885
0.2819
G
1.0781
139.2885
137.0000
16.2272
52
8.1368579864502
129.19500020732
108.3901
107.0000
14.7967
188
1006
1
31.6452
0.2763
G
1.0796
140.6452
140.0000
15.2285
62
8.88486671447754
130.272430621108
109.2912
109.0000
14.1816
188
1007
1
36.2537
0.3165
G
1.1321
146.2537
147.0000
15.1286
67
9.23618125915527
129.182699663151
110.6868
110.0000
12.7885
188
1008
1
17422.0430
152.1116
G
133.2477
17534.0430
7882.0000
18560.2129
141
13.3987598419189
131.589854933055
111.5750
112.0000
13.0599
124
1009
1
522.6429
4.5632
G
4.9451
630.6429
707.0000
250.1765
84
10.3417663574219
127.529954478727
107.4641
108.0000
13.0200
187
1010
1
843.6786
7.3661
G
7.5151
952.6786
1055.0000
497.7398
84
10.3417663574219
126.768198305178
107.8791
109.0000
11.8455
188
1011
1
118.6133
1.0356
G
1.7862
228.6133
237.0000
51.4006
75
9.77204990386963
127.987357082273
109.7802
110.0000
11.9916
188
1012
1
143.4079
1.2521
G
2.0034
252.4079
270.0000
67.0521
76
9.83698177337646
125.990435596414
108.3736
109.0000
11.3270
188
1013
1
83.1176
0.7257
G
1.5060
190.1176
191.0000
30.0600
68
9.30485343933105
126.239043585658
107.1923
107.0000
12.8260
188
1014
1
91.5195
0.7991
G
1.5924
199.5195
201.0000
34.9807
77
9.90148735046387
125.294335290302
108.5275
108.0000
11.5296
188
1015
1
16786.6758
146.5642
G
135.6298
16892.6758
7664.0000
18033.0020
141
13.3987598419189
124.549905480404
107.9833
106.0000
12.3666
124
1016
1
67.2273
0.5870
G
1.3757
176.2273
174.0000
23.9784
66
9.16699600219727
128.096095105206
108.3867
109.0000
12.7307
187
1017
1
54.0000
0.4715
G
1.2833
162.0000
160.0000
22.0209
63
8.95623207092285
126.234074234809
108.5548
108.0000
12.1561
161
1018
1
31.4091
0.2742
G
1.0981
136.4091
137.0000
15.6500
44
7.48482084274292
124.218977886662
106.3611
105.0000
12.8127
186
1019
1
23.8704
0.2084
G
1.0464
130.8704
132.0000
14.6351
54
8.29185962677002
125.063372169323
106.9725
107.0000
12.0422
188
1020
1
39.1552
0.3419
G
1.1649
144.1552
143.0000
17.8353
58
8.59348011016846
123.74551138223
106.5934
105.0000
12.4970
188
Total number of rows:
54359
Table truncated, full table size
6773 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM128522.TXT.gz
2.6 Mb
(ftp)
(http)
TXT
Processed data included within Sample table
Processed data provided as supplementary file
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