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GEO accession:
Sample GSM128523
Query DataSets for GSM128523
Status
Public on Mar 23, 2015
Title
1986_d_1
Sample type
RNA
Source name
biopsy, during treatment, chemoradiotherapy
Organism
Homo sapiens
Characteristics
female, cervical cancer
Extracted molecule
total RNA
Extraction protocol
ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label
Cy5
Label protocol
http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
Hybridization protocol
http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol
http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description
during treatment, chemoradiotherapy
Data processing
global median normalization
Submission date
Aug 15, 2006
Last update date
Mar 23, 2015
Contact name
Shuhei Noda
E-mail(s)
s_noda@nirs.go.jp
Organization name
National institute of radiological sciences
Department
Frontier research center
Street address
Anagawa 4-9-1
City
Chiba
State/province
Chiba
ZIP/Postal code
2658333
Country
Japan
Platform ID
GPL2895
Series (1)
GSE6213
Cervical cancer samples in NIRS
Data table header descriptions
ID_REF
Array
Logical array
Raw_intensity
Raw signal intensity value
VALUE
Median normalized signal intensity value
Quality_flag
CodeLink quality flag
Signal_strength
Signal strength
Spot_mean
Spot median
Spot_median
Spot median
Spot_stdev
Spot standard deviation
Spot_area
Spot area
Spot_diameter
Spot diameter
Spot_noise_level
Spot noise level
Bkgd_mean
Background mean
Bkgd_median
Background median
Bkgd_stdev
Background standard deviation
Bkgd_area
Background area
Data table
ID_REF
Array
Raw_intensity
VALUE
Quality_flag
Signal_strength
Spot_mean
Spot_median
Spot_stdev
Spot_area
Spot_diameter
Spot_noise_level
Bkgd_mean
Bkgd_median
Bkgd_stdev
Bkgd_area
1001
1
15033.2031
199.4813
G
158.8412
15115.2031
6926.0000
16644.1797
150
13.8197660446167
95.1592181840678
82.2333
82.0000
8.7728
124
1002
1
895.3372
11.8806
G
10.0905
977.3372
1144.0000
455.8774
86
10.4641580581665
96.8573396856919
82.3556
82.0000
9.9049
186
1003
1
3.5400
0.0470
L
0.8791
82.5400
83.0000
10.6550
50
7.97884559631348
93.8954636235886
80.5750
79.0000
9.9303
124
1004
1
20.0930
0.2666
G
1.0658
97.0930
97.0000
11.5372
43
7.3992772102356
91.0977752007903
77.6047
77.0000
9.3985
178
1005
1
8.5474
0.1134
L
0.9511
85.5474
86.0000
10.6591
95
10.9980792999268
89.9412699867944
77.7098
77.0000
8.6275
201
1006
1
16.8936
0.2242
G
1.0411
96.8936
97.0000
14.2698
47
7.73577785491943
93.0715886358666
80.0659
80.0000
8.7144
188
1007
1
23.2963
0.3091
G
1.1091
103.2963
104.0000
11.1465
54
8.29185962677002
93.1358223735018
80.5275
80.0000
8.7572
188
1008
1
17097.7461
226.8766
G
181.3707
17178.7461
9252.0000
17936.1406
164
14.4503040313721
94.7162238504821
80.6333
81.0000
9.1442
124
1009
1
381.5165
5.0625
G
4.8653
462.5165
525.0000
176.6026
91
10.7640514373779
95.0635428062016
81.1160
81.0000
9.3757
187
1010
1
594.7889
7.8925
G
7.4477
672.7889
802.0000
323.8427
90
10.7047443389893
90.3356237249399
78.4403
78.0000
8.2238
165
1011
1
68.0385
0.9028
G
1.5991
146.0385
150.0000
26.0012
78
9.96557521820068
91.3279252927608
77.5714
78.0000
8.8853
188
1012
1
62.4675
0.8289
G
1.5382
140.4675
142.0000
28.8730
77
9.90148735046387
91.317548771775
77.6703
78.0000
8.8784
188
1013
1
33.9394
0.4504
G
1.2269
109.9394
109.0000
12.5564
66
9.16699600219727
89.609715923202
76.9121
76.0000
9.0731
188
1014
1
39.9403
0.5300
G
1.2967
119.9403
118.0000
14.6031
67
9.23618125915527
92.4979967528826
79.7637
80.0000
8.3320
188
1015
1
15922.0869
211.2763
G
170.8939
16002.0869
7586.0000
16779.6309
129
12.8159236907959
93.6375683600839
80.9890
80.0000
9.0917
188
1016
1
34.6429
0.4597
G
1.2290
113.6429
110.0000
14.1250
56
8.444016456604
92.4653000541617
79.2308
79.0000
8.9769
188
1017
1
39.1875
0.5200
G
1.2746
117.1875
117.0000
14.7964
64
9.02703380584717
91.9392223230946
78.0275
78.0000
9.2928
188
1018
1
15.0000
0.1990
G
1.0039
96.0000
96.0000
16.6417
38
6.95579624176025
95.6283668566315
82.2637
81.0000
9.7522
188
1019
1
5.1176
0.0679
L
0.8831
92.1176
91.0000
11.6840
34
6.57952451705933
104.312458368062
86.2171
87.0000
11.5416
158
1020
1
11.8205
0.1569
L
0.9377
98.8205
97.0000
16.1116
39
7.04672574996948
105.389254273538
87.7747
87.0000
12.2595
188
Total number of rows:
54359
Table truncated, full table size
6548 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM128523.TXT.gz
2.6 Mb
(ftp)
(http)
TXT
Processed data included within Sample table
Processed data provided as supplementary file
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