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Sample GSM128529 Query DataSets for GSM128529
Status Public on Apr 30, 2007
Title 2509_p_1
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (2)
GSE3578 Activated Cell Death Pathway
GSE20167 Gene expression profiles of cervical cancers for novel molecular classification

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 6197.1299 121.6714 G 59.3162 6288.1299 3433.0000 6437.3496 156 14.093451499939 106.010369545281 90.9417 91.0000 10.0069 124 121.6714
1002 1 227.2907 4.4625 G 3.0541 316.2907 347.0000 96.4775 86 10.4641580581665 103.563706674024 89.4309 89.0000 9.7091 187 4.4625
1003 1 26.1765 0.5139 G 1.1185 114.1765 116.0000 12.8242 51 8.0582389831543 102.076421301279 88.6429 88.0000 9.3843 188 0.5139
1004 1 28.5902 0.5613 G 1.1360 118.5902 117.0000 13.1789 61 8.81292343139648 104.395255440366 90.0110 90.0000 9.5968 187 0.5613
1005 1 19.5000 0.3829 G 1.0387 110.5000 110.0000 12.8174 56 8.444016456604 106.384579753099 90.9341 91.0000 10.2564 188 0.3829
1006 1 33.7541 0.6627 G 1.2073 120.7541 119.0000 13.3891 61 8.81292343139648 100.01966745119 88.6961 87.0000 8.6798 187 0.6627
1007 1 33.7273 0.6622 G 1.1905 123.7273 121.0000 13.5138 66 9.16699600219727 103.927683365997 89.9725 90.0000 9.2851 188 0.6622
1008 1 6600.3013 129.5871 G 63.1475 6692.3013 4951.0000 6344.7495 148 13.7273254394531 105.978912671843 91.9667 92.0000 9.3193 124 129.5871
1009 1 256.5000 5.0360 G 3.3558 346.5000 371.0000 108.1278 82 10.2179079055786 103.25335867505 89.5284 90.0000 8.8356 182 5.0360
1010 1 139.0139 2.7293 G 2.1987 229.0139 254.0000 60.6084 72 9.57461452484131 104.159946006858 90.3352 90.0000 9.4400 188 2.7293
1011 1 107.3250 2.1072 G 1.9121 197.3250 198.0000 45.7850 80 10.0925302505493 103.196922849224 90.3956 90.0000 8.7980 188 2.1072
1012 1 34.9118 0.6854 G 1.2112 123.9118 121.0000 18.2190 68 9.30485343933105 102.307103623017 88.5989 89.0000 8.8714 188 0.6854
1013 1 25.8689 0.5079 G 1.1088 113.8689 114.0000 11.9925 61 8.81292343139648 102.693823014849 89.3736 88.0000 9.7959 188 0.5079
1014 1 28.1346 0.5524 G 1.1210 119.1346 121.0000 11.5925 52 8.1368579864502 106.275511396633 90.5659 91.0000 10.1837 188 0.5524
1015 1 6316.9819 124.0245 G 62.0737 6406.9819 2973.0000 6597.0327 167 14.5818719863892 103.215756549358 90.4083 90.0000 8.8105 124 124.0245
1016 1 71.4026 1.4019 G 1.5352 161.4026 160.0000 26.0924 77 9.90148735046387 105.136136667184 91.2099 90.0000 10.0908 187 1.4019
1017 1 36.9333 0.7251 G 1.2242 126.9333 127.0000 15.2921 75 9.77204990386963 103.683015627031 90.4231 90.0000 9.1220 188 0.7251
1018 1 23.6415 0.4642 G 1.0830 113.6415 114.0000 9.7789 53 8.21472454071045 104.928544021281 90.8956 90.0000 9.9524 188 0.4642
1019 1 20.9623 0.4116 G 1.0578 111.9623 114.0000 12.8209 53 8.21472454071045 105.843841694858 91.1813 91.0000 9.8959 188 0.4116
1020 1 24.4340 0.4797 G 1.0881 117.4340 117.0000 13.3706 53 8.21472454071045 107.923534054323 92.3500 93.0000 9.9490 186 0.4797

Total number of rows: 54359

Table truncated, full table size 6936 Kbytes.




Supplementary file Size Download File type/resource
GSM128529.TXT.gz 2.5 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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