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Sample GSM128536 Query DataSets for GSM128536
Status Public on Apr 30, 2007
Title 2512_d_2
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE3578 Activated Cell Death Pathway

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 7007.3887 172.7454 G 66.7466 7098.3887 5197.0000 6725.2446 141 13.3987598419189 106.348274138052 91.9500 91.0000 10.2322 124 172.7454
1002 1 206.9639 5.1021 G 2.8611 295.9639 319.0000 84.7746 83 10.2800235748291 103.4429902212 88.4780 89.0000 9.6287 188 5.1021
1003 1 29.2903 0.7221 G 1.1546 117.2903 117.0000 13.3940 62 8.88486671447754 101.581097932021 88.8132 88.0000 9.0541 188 0.7221
1004 1 28.5574 0.7040 G 1.1363 117.5574 116.0000 14.7565 61 8.81292343139648 103.452785886467 89.5444 89.0000 9.6352 186 0.7040
1005 1 22.5179 0.5551 G 1.0674 112.5179 111.0000 13.6630 56 8.444016456604 105.414319809602 89.5330 90.0000 10.2762 188 0.5551
1006 1 30.8070 0.7595 G 1.1511 120.8070 120.0000 13.9428 57 8.51907634735107 104.953731310668 89.9780 90.0000 9.9692 188 0.7595
1007 1 28.3143 0.6980 G 1.1263 117.3143 116.0000 13.3636 70 9.44069766998291 104.156756358 90.3022 89.0000 10.1045 188 0.6980
1008 1 7054.3501 173.9031 G 68.4660 7144.3501 4439.0000 6835.8066 142 13.4461898803711 104.348951506296 91.9750 90.0000 9.5660 124 173.9031
1009 1 87.0270 2.1454 G 1.7041 176.0270 182.0000 27.9043 74 9.70668506622314 103.297308244335 89.2983 89.0000 9.5315 187 2.1454
1010 1 116.7600 2.8784 G 1.9916 204.7600 213.0000 47.1822 75 9.77204990386963 102.809281911554 88.4000 88.0000 9.8729 186 2.8784
1011 1 27.7460 0.6840 G 1.1314 116.7460 114.0000 13.4069 63 8.95623207092285 103.189014685629 88.9341 89.0000 9.4593 188 0.6840
1012 1 34.7213 0.8559 G 1.2034 121.7213 121.0000 16.2058 61 8.81292343139648 101.144624777072 87.4890 87.0000 9.4298 188 0.8559
1013 1 34.7397 0.8564 G 1.1981 123.7397 121.0000 13.6693 73 9.64087581634521 103.282760333485 89.7318 89.0000 9.5218 185 0.8564
1014 1 214.5233 5.2884 G 2.9454 304.5233 332.0000 93.0043 86 10.4641580581665 103.389698711465 89.8736 90.0000 8.9265 188 5.2884
1015 1 7511.9028 185.1826 G 72.6140 7601.9028 5669.0000 7045.2275 146 13.6342573165894 104.689263682305 90.0167 90.0000 9.7928 124 185.1826
1016 1 39.1912 0.9661 G 1.2309 128.1912 128.0000 13.7950 68 9.30485343933105 104.144534444833 89.4231 89.0000 10.0964 188 0.9661
1017 1 37.2466 0.9182 G 1.2324 126.2466 125.0000 14.1922 73 9.64087581634521 102.439614165825 89.5769 89.0000 8.9597 188 0.9182
1018 1 30.3281 0.7476 G 1.1558 119.3281 119.0000 15.0997 64 9.02703380584717 103.240989668546 88.9615 89.0000 9.4940 188 0.7476
1019 1 18.4727 0.4554 G 1.0385 110.4727 112.0000 13.9125 55 8.36828422546387 106.378941590167 91.4121 92.0000 9.5860 188 0.4554
1020 1 20.3051 0.5006 G 1.0562 110.3051 110.0000 10.6345 59 8.66724491119385 104.438006018154 90.2253 90.0000 9.6253 188 0.5006

Total number of rows: 54359

Table truncated, full table size 6930 Kbytes.




Supplementary file Size Download File type/resource
GSM128536.TXT.gz 2.5 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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