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Sample GSM128544 Query DataSets for GSM128544
Status Public on Apr 30, 2007
Title 2774_d_2
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE3578 Activated Cell Death Pathway

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 5014.6426 104.1102 G 48.8819 5106.6426 4042.0000 4544.0117 167 14.5818719863892 104.468960910247 91.9083 92.0000 8.3126 124 104.1102
1002 1 170.7590 3.5452 G 2.4679 262.7590 274.0000 62.7167 83 10.2800235748291 106.471096553752 92.1271 92.0000 9.6474 187 3.5452
1003 1 22.7447 0.4722 G 1.0624 113.7447 117.0000 14.6105 47 7.73577785491943 107.060413154919 91.8500 91.0000 10.7069 186 0.4722
1004 1 30.9296 0.6421 G 1.1820 118.9296 118.0000 13.7997 71 9.50789165496826 100.614935593162 88.1758 88.0000 8.4100 188 0.6421
1005 1 24.0290 0.4989 G 1.0940 112.0290 112.0000 14.3648 69 9.37302112579346 102.399557873022 88.5879 88.0000 9.5997 188 0.4989
1006 1 31.1692 0.6471 G 1.1605 121.1692 120.0000 13.0285 65 9.09728336334229 104.408668814607 90.3876 90.0000 9.6058 184 0.6471
1007 1 33.4459 0.6944 G 1.1784 122.4459 121.0000 15.3967 74 9.70668506622314 103.905308133072 89.7238 89.0000 9.9369 187 0.6944
1008 1 5650.6240 117.3140 G 54.8576 5739.6240 5367.0000 4823.6929 159 14.2283201217651 104.627776113882 89.0667 89.0000 10.4185 124 117.3140
1009 1 160.2118 3.3262 G 2.3909 248.2118 250.0000 59.0045 85 10.4031419754028 103.815162993429 88.7273 88.0000 10.5434 182 3.3262
1010 1 122.6533 2.5464 G 2.0647 211.6533 218.0000 44.8997 75 9.77204990386963 102.509856432368 89.2570 89.0000 9.0066 185 2.5464
1011 1 45.0519 0.9353 G 1.2943 134.0519 136.0000 16.5277 77 9.90148735046387 103.567708874423 88.4121 89.0000 9.7118 188 0.9353
1012 1 39.1739 0.8133 G 1.2398 126.1739 124.0000 14.5213 69 9.37302112579346 101.771019518371 88.1154 87.0000 9.8473 188 0.8133
1013 1 28.2754 0.5870 G 1.1565 114.2754 112.0000 21.2179 69 9.37302112579346 98.8128780558603 87.0497 86.0000 8.5419 187 0.5870
1014 1 62.0267 1.2878 G 1.4835 149.0267 148.0000 26.2191 75 9.77204990386963 100.458368192213 87.2198 87.0000 8.9722 188 1.2878
1015 1 5597.4160 116.2093 G 56.3405 5683.4160 4639.0000 5042.6860 175 14.9270534515381 100.876222212502 86.5405 86.0000 9.9175 230 116.2093
1016 1 30.9315 0.6422 G 1.1580 118.9315 119.0000 13.3050 73 9.64087581634521 102.702606771433 87.9061 88.0000 9.8017 187 0.6422
1017 1 30.6081 0.6355 G 1.1565 118.6081 118.0000 15.2473 74 9.70668506622314 102.55404940598 88.0220 88.0000 9.7027 188 0.6355
1018 1 23.7344 0.4928 G 1.0981 109.7344 110.0000 13.6017 64 9.02703380584717 99.9354537531326 86.6978 86.0000 9.2903 188 0.4928
1019 1 18.3208 0.3804 G 1.0384 107.3208 106.0000 13.6683 53 8.21472454071045 103.347487359252 88.8956 89.0000 9.5650 188 0.3804
1020 1 28.9286 0.6006 G 1.1542 115.9286 117.0000 13.0563 70 9.44069766998291 100.44350596487 86.2582 87.0000 8.9623 188 0.6006

Total number of rows: 54359

Table truncated, full table size 6949 Kbytes.




Supplementary file Size Download File type/resource
GSM128544.TXT.gz 2.5 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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