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Sample GSM128545 Query DataSets for GSM128545
Status Public on Sep 28, 2010
Title 2775_p_1
Sample type RNA
 
Source name biopsy, prior to treatment, chemoradiotherapy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Sep 28, 2010
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE20167 Gene expression profiles of cervical cancers for novel molecular classification

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE Median normalized signal intensity value
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area
1001 1 5726.0815 129.8104 G 55.0924 5817.0815 3911.0000 5189.1367 161 14.3175268173218 105.587637302051 91.1500 91.0000 9.7251 124
1002 1 204.7701 4.6421 G 2.8504 293.7701 309.0000 76.6916 87 10.5248203277588 103.064000814367 89.3956 89.0000 9.3760 188
1003 1 22.7368 0.5154 G 1.0990 111.7368 112.0000 13.5744 57 8.51907634735107 101.669864588283 89.0385 89.0000 8.4466 188
1004 1 27.4737 0.6228 G 1.1340 116.4737 116.0000 16.4072 57 8.51907634735107 102.710853876949 89.3944 89.0000 9.1406 186
1005 1 25.2239 0.5718 G 1.1170 113.2239 114.0000 13.3549 67 9.23618125915527 101.367386619075 88.1099 88.0000 8.9116 188
1006 1 24.6452 0.5587 G 1.1043 114.6452 114.0000 12.9230 62 8.88486671447754 103.816226347107 89.9615 90.0000 9.2108 188
1007 1 22.1525 0.5022 G 1.0840 111.1525 112.0000 11.7109 59 8.66724491119385 102.542742111711 88.6484 89.0000 9.0285 188
1008 1 5538.1250 125.5494 G 54.4378 5627.1250 3815.0000 5281.7793 170 14.7122640609741 103.36791172254 88.9833 89.0000 9.5786 124
1009 1 256.5506 5.8160 G 3.3671 342.5506 357.0000 113.6974 89 10.6451082229614 101.734325052633 86.8012 86.0000 10.4895 177
1010 1 137.0127 3.1061 G 2.2023 226.0127 234.0000 56.4208 79 10.0292530059814 102.623902423235 89.5475 89.0000 9.0826 185
1011 1 24.0000 0.5441 G 1.0957 117.0000 117.0000 13.8664 72 9.57461452484131 106.78146894878 92.2857 93.0000 9.1876 188
1012 1 34.3636 0.7790 G 1.1892 123.3636 122.0000 12.2284 66 9.16699600219727 103.739383934854 90.1648 89.0000 9.8263 188
1013 1 23.5645 0.5342 G 1.0895 113.5645 114.0000 12.7742 62 8.88486671447754 104.234990636175 90.0276 90.0000 9.4900 187
1014 1 27.5735 0.6251 G 1.1431 116.5735 116.0000 14.9551 68 9.30485343933105 101.982794666804 88.6374 89.0000 8.6552 188
1015 1 7657.4629 173.5949 G 72.4085 7748.4629 6935.0000 6791.4238 164 14.4503040313721 107.010448835141 91.0833 91.0000 10.6736 124
1016 1 31.3803 0.7114 G 1.1657 118.3803 118.0000 12.2352 71 9.50789165496826 101.553695857526 86.3846 87.0000 9.7025 188
1017 1 24.8108 0.5625 G 1.1196 112.8108 112.0000 11.9906 74 9.70668506622314 100.759009583824 87.5879 88.0000 8.5060 188
1018 1 21.4107 0.4854 G 1.0606 109.4107 110.0000 11.7880 56 8.444016456604 103.161518858039 87.6374 88.0000 10.1077 188
1019 1 21.7639 0.4934 G 1.0774 106.7639 106.0000 11.9367 72 9.57461452484131 99.0976961676561 86.2747 85.0000 9.3985 188
1020 1 27.6471 0.6268 G 1.1274 116.6471 118.0000 12.2207 68 9.30485343933105 103.465214081708 89.4309 89.0000 9.6435 187

Total number of rows: 54359

Table truncated, full table size 6558 Kbytes.




Supplementary file Size Download File type/resource
GSM128545.TXT.gz 2.5 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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