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GEO accession:
Sample GSM128546
Query DataSets for GSM128546
Status
Public on Sep 28, 2010
Title
2775_p_2
Sample type
RNA
Source name
biopsy, prior to treatment, chemoradiotherapy
Organism
Homo sapiens
Characteristics
female, cervical cancer
Extracted molecule
total RNA
Extraction protocol
ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label
Cy5
Label protocol
http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
Hybridization protocol
http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol
http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description
prior to treatment, chemoradiotherapy
Data processing
global median normalization
Submission date
Aug 15, 2006
Last update date
Sep 28, 2010
Contact name
Shuhei Noda
E-mail(s)
s_noda@nirs.go.jp
Organization name
National institute of radiological sciences
Department
Frontier research center
Street address
Anagawa 4-9-1
City
Chiba
State/province
Chiba
ZIP/Postal code
2658333
Country
Japan
Platform ID
GPL2895
Series (1)
GSE20167
Gene expression profiles of cervical cancers for novel molecular classification
Data table header descriptions
ID_REF
Array
Logical array
Raw_intensity
Raw signal intensity value
VALUE
Median normalized signal intensity value
Quality_flag
CodeLink quality flag
Signal_strength
Signal strength
Spot_mean
Spot median
Spot_median
Spot median
Spot_stdev
Spot standard deviation
Spot_area
Spot area
Spot_diameter
Spot diameter
Spot_noise_level
Spot noise level
Bkgd_mean
Background mean
Bkgd_median
Background median
Bkgd_stdev
Background standard deviation
Bkgd_area
Background area
Data table
ID_REF
Array
Raw_intensity
VALUE
Quality_flag
Signal_strength
Spot_mean
Spot_median
Spot_stdev
Spot_area
Spot_diameter
Spot_noise_level
Bkgd_mean
Bkgd_median
Bkgd_stdev
Bkgd_area
1001
1
5575.3643
122.3458
G
54.7754
5663.3643
4530.0000
4969.5083
153
13.9572792053223
103.392443802155
88.3750
88.0000
10.2616
124
1002
1
193.4118
4.2442
G
2.7779
280.4118
296.0000
75.1877
85
10.4031419754028
100.94242886011
87.5879
87.0000
9.2950
188
1003
1
28.0690
0.6159
G
1.1263
115.0690
116.0000
12.2838
58
8.59348011016846
102.169369820977
87.5333
87.0000
10.1129
186
1004
1
31.9344
0.7008
G
1.1863
117.9344
117.0000
10.5035
61
8.81292343139648
99.414016763521
87.9830
86.0000
8.9427
183
1005
1
23.9016
0.5245
G
1.0913
110.9016
111.0000
15.8866
61
8.81292343139648
101.618993221872
87.3132
87.0000
9.7460
188
1006
1
29.3438
0.6439
G
1.1440
116.3438
115.0000
13.7559
64
9.02703380584717
101.694647882158
87.5291
87.0000
9.7964
178
1007
1
30.6154
0.6718
G
1.1601
116.6154
119.0000
13.2301
65
9.09728336334229
100.52529191916
86.2747
86.0000
9.6835
188
1008
1
5687.2661
124.8014
G
55.0219
5777.2661
5220.0000
5222.2710
156
14.093451499939
104.999480228616
89.5833
90.0000
9.9997
124
1009
1
294.3882
6.4601
G
3.7523
381.3882
412.0000
124.3111
85
10.4031419754028
101.642127768322
87.9780
87.0000
9.7614
188
1010
1
133.7533
2.9351
G
2.2112
220.7533
234.0000
55.7548
77
9.90148735046387
99.832579122096
87.1593
87.0000
8.5551
188
1011
1
30.2879
0.6646
G
1.1511
116.2879
115.0000
14.2752
66
9.16699600219727
101.027644995064
86.2857
86.0000
10.0184
188
1012
1
35.1452
0.7712
G
1.2005
122.1452
122.0000
13.2347
62
8.88486671447754
101.744242039445
88.2143
87.0000
9.8295
188
1013
1
23.1905
0.5089
G
1.0502
112.1905
112.0000
13.6252
63
8.95623207092285
106.831714851442
89.4176
89.0000
11.8878
188
1014
1
41.1857
0.9038
G
1.2782
128.1857
124.0000
24.6902
70
9.44069766998291
100.283233950039
87.2527
87.0000
8.8555
188
1015
1
5817.3818
127.6567
G
59.0233
5902.3818
3572.0000
5557.0166
167
14.5818719863892
100.000916717412
85.4333
85.0000
10.0006
124
1016
1
31.4627
0.6904
G
1.1667
117.4627
116.0000
12.2235
67
9.23618125915527
100.67743871525
86.4144
86.0000
9.7850
187
1017
1
33.9265
0.7445
G
1.1875
119.9265
121.0000
14.4348
68
9.30485343933105
100.991166024707
86.1154
86.0000
9.9941
188
1018
1
26.1846
0.5746
G
1.1298
112.1846
110.0000
16.7027
65
9.09728336334229
99.2926151842437
85.6648
86.0000
8.8617
188
1019
1
21.1148
0.4633
G
1.0611
108.1148
110.0000
12.9894
61
8.81292343139648
101.886374168404
87.6099
87.0000
9.9242
188
1020
1
28.9118
0.6344
G
1.1500
113.9118
112.0000
13.4030
68
9.30485343933105
99.0527259524857
85.6758
85.0000
9.3685
188
Total number of rows:
54359
Table truncated, full table size
6556 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM128546.TXT.gz
2.5 Mb
(ftp)
(http)
TXT
Processed data included within Sample table
Processed data provided as supplementary file
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