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Sample GSM128556 Query DataSets for GSM128556
Status Public on Mar 23, 2015
Title 2789_d_2
Sample type RNA
 
Source name biopsy, during treatment, chemoradiotherapy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Mar 23, 2015
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE6213 Cervical cancer samples in NIRS

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE Median normalized signal intensity value
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area
1001 1 6324.0781 114.8017 G 55.6712 6422.0781 5795.0000 5700.5801 143 13.4934520721436 115.35727105185 97.9083 98.0000 11.5715 124
1002 1 230.0581 4.1763 G 2.8999 326.0581 345.0000 114.2448 86 10.4641580581665 112.437617039707 95.7308 96.0000 10.9584 188
1003 1 39.5714 0.7183 G 1.1334 135.5714 121.0000 58.9116 42 7.3127326965332 119.617708193749 97.6044 96.0000 15.7451 188
1004 1 29.2167 0.5304 G 1.1105 126.2167 127.0000 12.5792 60 8.74038791656494 113.654281203983 96.9176 97.0000 11.1029 188
1005 1 21.9767 0.3989 L 0.9448 114.9767 117.0000 16.0906 43 7.3992772102356 121.696761971912 96.0604 93.0000 19.1312 188
1006 1 44.9841 0.8166 G 1.2900 135.9841 125.0000 49.4672 63 8.95623207092285 105.412967027605 91.8791 91.0000 9.6086 188
1007 1 26.9310 0.4889 L 0.7948 119.9310 116.0000 14.0931 29 6.07650756835938 150.904008421968 101.2747 93.0000 38.6027 188
1008 1 6232.9136 113.1468 G 59.6425 6322.9136 4195.0000 5903.0234 152 13.9115924835205 106.013628345741 91.1417 90.0000 10.6757 124
1009 1 319.5109 5.8001 G 3.8102 411.5109 455.0000 151.6689 92 10.8230323791504 108.00109402625 92.2155 92.0000 10.6674 187
1010 1 170.1159 3.0881 G 2.1069 266.1159 277.0000 62.9114 69 9.37302112579346 126.306438750939 99.7418 96.0000 20.2043 188
1011 1 58.3014 1.0584 G 1.3447 151.3014 149.0000 26.3925 73 9.64087581634521 112.516040084254 94.7989 93.0000 13.0107 185
1012 1 35.4310 0.6432 G 1.1279 130.4310 130.0000 11.2925 58 8.59348011016846 115.642320720995 97.3462 95.0000 13.7615 188
1013 1 31.1231 0.5650 G 1.0992 125.1231 124.0000 20.0042 65 9.09728336334229 113.828111608346 94.8901 94.0000 13.2187 188
1014 1 381.7325 6.9296 G 4.1687 475.7325 509.0000 157.6648 86 10.4641580581665 114.121001609411 95.4176 94.0000 13.4140 188
1015 1 6629.9214 120.3537 G 58.7163 6725.9214 4626.0000 5986.3125 155 14.04820728302 114.549526026923 97.3000 96.0000 12.3664 124
1016 1 45.5882 0.8276 G 1.2111 138.5882 140.0000 17.1672 68 9.30485343933105 114.436384268259 96.0000 93.0000 14.2909 171
1017 1 32.8551 0.5964 G 1.1779 125.8551 123.0000 20.4176 69 9.37302112579346 106.850283438203 93.4451 93.0000 9.2335 188
1018 1 23.0952 0.4193 L 0.9886 118.0952 118.0000 18.3781 42 7.3127326965332 119.452040800762 96.8132 95.0000 16.3014 188
1019 1 69.0938 1.2543 G 1.4753 163.0938 124.0000 171.4059 64 9.02703380584717 110.552634555999 96.0385 94.0000 11.0351 188
1020 1 28.9836 0.5261 G 1.1043 124.9836 124.0000 16.6689 61 8.81292343139648 113.176878911227 96.3242 96.0000 11.4513 188

Total number of rows: 54359

Table truncated, full table size 6580 Kbytes.




Supplementary file Size Download File type/resource
GSM128556.TXT.gz 2.5 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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