NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM128564 Query DataSets for GSM128564
Status Public on Mar 23, 2015
Title 1348_d_2
Sample type RNA
 
Source name biopsy, during treatment, radiotherapy alone
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, radiotherapy alone
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Mar 23, 2015
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE6213 Cervical cancer samples in NIRS

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE Median normalized signal intensity value
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area
1001 1 12849.1309 151.6539 G 130.3173 12931.1309 3906.0000 14551.9629 155 14.04820728302 99.2280280396549 80.6917 82.0000 11.4853 124
1002 1 816.4176 9.6359 G 9.0791 896.4176 1052.0000 482.6935 91 10.7640514373779 98.7344757654306 80.5169 80.0000 12.4896 184
1003 1 7.1413 0.0843 L 0.8990 85.1413 83.0000 15.1317 92 10.8230323791504 94.7085195324041 79.4463 78.0000 11.1390 183
1004 1 17.8293 0.2104 G 1.0190 94.8293 96.0000 18.3435 41 7.22515201568604 93.0592309646843 77.7253 77.0000 10.7062 146
1005 1 9.6129 0.1135 L 0.9426 85.6129 86.0000 12.8432 62 8.88486671447754 90.829000782168 76.7692 76.0000 9.8860 121
1006 1 19.9362 0.2353 G 1.0505 98.9362 99.0000 11.5931 47 7.73577785491943 94.1829503615766 78.8953 79.0000 10.1220 178
1007 1 19.1282 0.2258 G 1.0401 96.1282 94.0000 14.0333 39 7.04672574996948 92.4259262400643 77.7611 77.0000 10.2839 186
1008 1 12840.9775 151.5577 G 134.7890 12920.9775 3396.0000 15040.4834 179 15.0966844558716 95.8607922314182 79.9583 80.0000 10.5739 124
1009 1 316.3647 3.7339 G 4.1911 395.3647 447.0000 143.3581 85 10.4031419754028 94.3345455571489 78.6593 79.0000 10.2230 188
1010 1 704.6552 8.3168 G 8.5789 781.6552 896.0000 398.2656 87 10.5248203277588 91.1138589696687 77.6868 77.0000 9.4092 188
1011 1 73.7792 0.8708 G 1.6284 150.7792 156.0000 28.6871 77 9.90148735046387 92.5911690403247 77.7637 77.0000 10.3941 188
1012 1 104.7432 1.2362 G 1.9292 182.7432 193.0000 45.1751 74 9.70668506622314 94.7224902866839 79.5934 78.0000 11.1483 188
1013 1 34.0000 0.4013 G 1.2201 111.0000 109.0000 16.1480 66 9.16699600219727 90.9792661943468 76.5330 77.0000 9.3195 188
1014 1 29.5833 0.3492 G 1.1497 107.5833 107.0000 12.3143 60 8.74038791656494 93.5751049366958 77.9396 78.0000 10.3834 188
1015 1 12053.8428 142.2674 G 123.0017 12136.8428 3500.0000 14034.1494 155 14.04820728302 98.6721781160304 81.6417 83.0000 10.4481 124
1016 1 22.5789 0.2665 G 1.0951 100.5789 97.0000 12.6477 57 8.51907634735107 91.8449799266736 77.8352 78.0000 9.2300 188
1017 1 16.2143 0.1914 G 1.0128 94.2143 93.0000 18.3881 42 7.3127326965332 93.0248789293237 78.5769 78.0000 10.0166 188
1018 1 10.5385 0.1244 L 0.9212 89.5385 87.0000 11.6901 39 7.04672574996948 97.198371484176 79.3791 79.0000 12.1322 188
1019 1 16.9143 0.1996 G 1.0030 95.9143 96.0000 12.0009 35 6.67558097839355 95.6300705327449 78.8846 79.0000 11.0867 188
1020 1 29.8049 0.3518 G 1.1448 108.8049 109.0000 12.7322 41 7.22515201568604 95.038662446898 79.2253 79.0000 10.6924 188

Total number of rows: 54359

Table truncated, full table size 6577 Kbytes.




Supplementary file Size Download File type/resource
GSM128564.TXT.gz 2.6 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap