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Sample GSM128568 Query DataSets for GSM128568
Status Public on Apr 30, 2007
Title 1590_d_2
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, radiotherapy alone
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE3578 Activated Cell Death Pathway

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 15084.3877 200.7863 G 138.6126 15168.3877 9942.0000 14907.1416 131 12.9148902893066 109.430106824959 86.2088 84.0000 16.9534 188 200.7863
1002 1 833.6778 11.0970 G 10.0988 909.6778 1079.0000 515.7292 90 10.7047443389893 90.0774901535942 76.9011 76.0000 9.3850 188 11.0970
1003 1 18.9737 0.2526 G 1.0380 97.9737 95.0000 21.4237 38 6.95579624176025 94.3889441305661 78.0714 79.0000 10.2593 188 0.2526
1004 1 16.7297 0.2227 G 1.0167 93.7297 92.0000 15.8875 37 6.86366271972656 92.1928420982526 76.0333 77.0000 10.1286 186 0.2227
1005 1 5.4118 0.0720 L 0.8949 80.4118 82.0000 12.3458 34 6.57952451705933 89.8540898101601 76.1868 75.0000 9.9027 188 0.0720
1006 1 18.0200 0.2399 G 1.0236 94.0200 95.0000 10.4947 50 7.97884559631348 91.851653231451 75.7582 76.0000 10.5678 188 0.2399
1007 1 14.5000 0.1930 L 0.9871 93.5000 90.0000 14.4378 30 6.18038702011108 94.7236052257861 78.2308 79.0000 10.4824 188 0.1930
1008 1 14611.1064 194.4865 G 141.2743 14692.1064 5460.0000 16033.1289 161 14.3175268173218 103.997005147888 81.9083 81.0000 15.3313 124 194.4865
1009 1 381.0899 5.0726 G 4.7970 461.0899 514.0000 204.1625 89 10.6451082229614 96.1211933007302 79.7515 80.0000 10.7475 171 5.0726
1010 1 3308.0203 44.0326 G 35.3166 3388.0203 3668.0000 2387.3486 99 11.2272310256958 95.9328997275337 79.6796 80.0000 10.6219 187 44.0326
1011 1 88.8831 1.1831 G 1.7923 165.8831 171.0000 37.1162 77 9.90148735046387 92.5532719490103 77.5275 77.0000 10.3688 188 1.1831
1012 1 51.0597 0.6796 G 1.4040 128.0597 126.0000 19.0803 67 9.23618125915527 91.209523179603 78.1160 77.0000 9.4730 187 0.6796
1013 1 52.4507 0.6982 G 1.3888 129.4507 129.0000 18.6870 71 9.50789165496826 93.213171326004 78.8956 77.0000 10.8088 188 0.6982
1014 1 11.3714 0.1514 L 0.9450 90.3714 92.0000 12.4421 35 6.67558097839355 95.6360471048445 80.7857 79.0000 11.0907 188 0.1514
1015 1 14826.3789 197.3520 G 140.1041 14908.3789 7096.0000 15187.5088 126 12.6660251617432 106.409266527007 85.9121 82.0000 16.2728 188 197.3520
1016 1 100.2344 1.3342 G 1.6614 179.2344 186.0000 34.4999 64 9.02703380584717 107.878707900971 82.0353 79.0000 19.2525 176 1.3342
1017 1 21.8649 0.2910 G 1.0632 98.8649 96.0000 12.2456 37 6.86366271972656 92.9867324326833 77.9341 77.0000 10.6578 188 0.2910
1018 1 5.6989 0.0759 L 0.8960 84.6989 83.0000 14.8576 93 10.8816947937012 94.5291312554087 79.4439 79.0000 10.3528 231 0.0759
1019 1 -2.8276 -0.0376 L 0.8005 76.1724 76.0000 14.0861 29 6.07650756835938 95.1587578619127 81.0237 79.0000 10.7725 175 -0.0376
1020 1 19.5429 0.2601 G 1.0164 104.5429 101.0000 16.8155 35 6.67558097839355 102.854690744193 84.1775 85.0000 11.9031 175 0.2601

Total number of rows: 54359

Table truncated, full table size 6949 Kbytes.




Supplementary file Size Download File type/resource
GSM128568.TXT.gz 2.6 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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