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Sample GSM128570 Query DataSets for GSM128570
Status Public on Apr 30, 2007
Title 1688_p_2
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, radiotherapy alone
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE3578 Activated Cell Death Pathway

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 23099.7637 171.1558 G 217.1950 23189.7637 8824.0000 25797.8145 159 14.2283201217651 106.769314490217 88.9667 90.0000 11.1795 124 171.1558
1002 1 1458.3982 10.8059 G 14.7692 1544.3982 1847.0000 893.1851 110 11.8345403671265 104.569180837162 86.6648 86.0000 12.3794 185 10.8059
1003 1 0.2333 0.0017 L 0.8367 89.2333 92.0000 12.3117 30 6.18038702011108 106.655429051966 87.6703 89.0000 11.7703 188 0.0017
1004 1 13.5294 0.1002 L 0.9741 98.5294 101.0000 14.1260 51 8.0582389831543 101.148822813894 85.9721 85.0000 10.7659 185 0.1002
1005 1 10.8687 0.0805 L 0.9357 97.8687 94.0000 21.7254 101 11.3400707244873 104.589766668004 87.3070 87.0000 11.7265 236 0.0805
1006 1 29.9643 0.2220 G 1.1140 115.9643 114.0000 14.3016 56 8.444016456604 104.095783034353 85.2753 86.0000 12.0639 184 0.2220
1007 1 60.8082 0.4506 G 1.3912 146.8082 145.0000 21.6008 73 9.64087581634521 105.528337598398 87.9489 86.0000 13.0189 182 0.4506
1008 1 23948.0566 177.4411 G 220.3963 24038.0566 8154.0000 25251.6836 159 14.2283201217651 109.067423101751 89.4034 90.0000 12.7116 123 177.4411
1009 1 520.2421 3.8547 G 5.8088 606.2421 677.0000 244.8625 95 10.9980792999268 104.365766424544 87.2570 86.0000 12.2438 185 3.8547
1010 1 784.9130 5.8157 G 8.3453 871.9130 1025.0000 420.5239 92 10.8230323791504 104.479295087331 86.8132 87.0000 11.6529 188 5.8157
1011 1 156.2000 1.1574 G 2.3113 241.2000 254.0000 56.3073 80 10.0925302505493 104.355485247083 86.9670 85.0000 12.9037 188 1.1574
1012 1 74.3380 0.5508 G 1.5640 159.3380 161.0000 29.6120 71 9.50789165496826 101.879411296168 85.5769 85.0000 11.2529 188 0.5508
1013 1 89.4416 0.6627 G 1.7216 173.4416 175.0000 30.7637 77 9.90148735046387 100.747256813701 83.9835 84.0000 11.1648 188 0.6627
1014 1 25.9388 0.1922 G 1.0879 106.9388 109.0000 18.0729 49 7.89865398406982 98.2994871388026 83.2692 81.0000 11.5330 188 0.1922
1015 1 23606.0059 174.9067 G 232.4182 23692.0059 9581.0000 25483.7305 181 15.1807889938354 101.936965783138 88.1833 86.0000 10.6246 124 174.9067
1016 1 19.1905 0.1422 L 0.9951 108.1905 109.0000 14.2214 42 7.3127326965332 108.726935565422 88.6374 89.0000 13.1513 188 0.1422
1017 1 9.2424 0.0685 L 0.8943 99.2424 100.0000 11.8527 33 6.48204469680786 110.967829616981 90.2703 90.0000 13.9786 154 0.0685
1018 1 7.1795 0.0532 L 0.9053 93.1795 94.0000 13.1868 39 7.04672574996948 102.931675040893 87.3741 86.0000 11.2878 143 0.0532
1019 1 52.0909 0.3860 G 1.3511 137.0909 108.0000 71.3397 66 9.16699600219727 101.467143626149 85.2976 85.0000 10.9781 174 0.3860
1020 1 69.2167 0.5129 G 1.3422 160.2167 160.0000 19.5398 60 8.74038791656494 119.367544228779 94.1966 91.0000 18.9117 184 0.5129

Total number of rows: 54359

Table truncated, full table size 7031 Kbytes.




Supplementary file Size Download File type/resource
GSM128570.TXT.gz 2.6 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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