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Sample GSM128589 Query DataSets for GSM128589
Status Public on Sep 28, 2010
Title 2513_p_1
Sample type RNA
 
Source name biopsy, prior to treatment, radiotherapy alone
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, radiotherapy alone
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Sep 28, 2010
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE20167 Gene expression profiles of cervical cancers for novel molecular classification

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE Median normalized signal intensity value
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area
1001 1 6121.2520 104.9811 G 55.0039 6218.2520 4843.0000 5531.3047 145 13.5874843597412 113.051050180492 98.3917 97.0000 10.7007 124
1002 1 302.1591 5.1821 G 3.5453 398.1591 413.0000 128.8334 88 10.5851345062256 112.30687128303 96.6484 96.0000 10.8712 188
1003 1 24.0385 0.4123 G 1.0463 125.0385 126.0000 16.7446 52 8.1368579864502 119.503204168912 101.0330 101.0000 12.3355 188
1004 1 45.3929 0.7785 G 1.2422 143.3929 134.0000 38.7366 56 8.444016456604 115.434902696189 99.7253 98.0000 11.6233 188
1005 1 20.0870 0.3445 G 1.0122 123.0870 122.0000 15.0070 46 7.65303993225098 121.608440019 102.8297 103.0000 12.4056 188
1006 1 27.5088 0.4718 G 1.0875 129.5088 128.0000 12.5168 57 8.51907634735107 119.083426266924 101.5506 102.0000 11.3889 184
1007 1 28.4265 0.4875 G 1.0955 130.4265 128.0000 14.3633 68 9.30485343933105 119.053094737447 102.3132 102.0000 11.3687 188
1008 1 6783.5176 116.3391 G 59.4222 6882.5176 5063.0000 5889.7651 145 13.5874843597412 115.824094786971 99.5000 99.0000 11.2161 124
1009 1 257.1647 4.4104 G 3.2253 351.1647 371.0000 113.7684 85 10.4031419754028 108.878254058509 95.8333 94.0000 9.9188 186
1010 1 498.2000 8.5443 G 5.3477 593.2000 641.0000 245.5410 85 10.4031419754028 110.92531209683 96.3556 95.0000 10.6169 186
1011 1 48.6027 0.8335 G 1.3147 143.6027 135.0000 39.9821 73 9.64087581634521 109.230412777586 95.1758 95.0000 9.4869 188
1012 1 36.5538 0.6269 G 1.1866 130.5538 132.0000 13.6664 65 9.09728336334229 110.019094828998 94.1813 94.0000 10.6794 188
1013 1 35.9552 0.6166 G 1.1804 130.9552 124.0000 29.2873 67 9.23618125915527 110.94394388996 95.7735 95.0000 10.6293 187
1014 1 99.9620 1.7144 G 1.7729 193.9620 187.0000 68.1784 79 10.0292530059814 109.405991863698 95.0495 94.0000 10.2707 188
1015 1 6764.7466 116.0172 G 59.9244 6861.7466 5588.0000 6064.8364 152 13.9115924835205 114.506764609121 98.3167 97.0000 11.6712 124
1016 1 42.2222 0.7241 G 1.2538 137.2222 136.0000 17.3511 72 9.57461452484131 109.441893480683 95.4396 95.0000 9.6279 188
1017 1 23.0746 0.3957 G 1.0515 120.0746 119.0000 12.9722 67 9.23618125915527 114.189239677033 96.5824 97.0000 11.4595 188
1018 1 27.9710 0.4797 G 1.1368 122.9710 121.0000 16.8557 69 9.37302112579346 108.176977846152 95.4451 95.0000 8.7846 188
1019 1 25.5000 0.4373 G 1.0847 123.5000 122.0000 19.2094 56 8.444016456604 113.856717398818 98.0604 98.0000 10.5711 188
1020 1 34.9722 0.5998 G 1.1746 131.9722 129.0000 16.4916 72 9.57461452484131 112.351549515328 97.3846 97.0000 10.2344 188

Total number of rows: 54359

Table truncated, full table size 6581 Kbytes.




Supplementary file Size Download File type/resource
GSM128589.TXT.gz 2.5 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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