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GEO accession:
Sample GSM128608
Query DataSets for GSM128608
Status
Public on Mar 23, 2015
Title
176_d_2
Sample type
RNA
Source name
biopsy, during treatment, carbon-ion radiotherapy
Organism
Homo sapiens
Characteristics
female, cervical cancer
Extracted molecule
total RNA
Extraction protocol
ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label
Cy5
Label protocol
http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
Hybridization protocol
http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol
http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description
during treatment, carbon-ion radiotherapy
Data processing
global median normalization
Submission date
Aug 15, 2006
Last update date
Mar 23, 2015
Contact name
Shuhei Noda
E-mail(s)
s_noda@nirs.go.jp
Organization name
National institute of radiological sciences
Department
Frontier research center
Street address
Anagawa 4-9-1
City
Chiba
State/province
Chiba
ZIP/Postal code
2658333
Country
Japan
Platform ID
GPL2895
Series (1)
GSE6213
Cervical cancer samples in NIRS
Data table header descriptions
ID_REF
Array
Logical array
Raw_intensity
Raw signal intensity value
VALUE
Median normalized signal intensity value
Quality_flag
CodeLink quality flag
Signal_strength
Signal strength
Spot_mean
Spot median
Spot_median
Spot median
Spot_stdev
Spot standard deviation
Spot_area
Spot area
Spot_diameter
Spot diameter
Spot_noise_level
Spot noise level
Bkgd_mean
Background mean
Bkgd_median
Background median
Bkgd_stdev
Background standard deviation
Bkgd_area
Background area
Data table
ID_REF
Array
Raw_intensity
VALUE
Quality_flag
Signal_strength
Spot_mean
Spot_median
Spot_stdev
Spot_area
Spot_diameter
Spot_noise_level
Bkgd_mean
Bkgd_median
Bkgd_stdev
Bkgd_area
1001
1
15444.4150
181.4264
G
168.2127
15519.4150
9708.0000
15637.1436
137
13.2073392868042
92.2606410201751
76.2198
75.0000
11.5071
188
1002
1
721.2527
8.4726
G
9.0518
796.2527
923.0000
432.0141
91
10.7640514373779
87.9663369993897
75.0226
75.0000
8.6442
183
1003
1
1.1895
0.0140
L
0.8569
78.1895
77.0000
13.0677
95
10.9980792999268
91.2462700753876
75.9786
77.0000
9.4975
193
1004
1
22.5714
0.2651
G
1.0891
96.5714
97.0000
9.9382
42
7.3127326965332
88.6713771999695
74.9080
74.0000
9.7809
169
1005
1
7.5263
0.0884
L
0.9062
82.5263
83.0000
14.1081
38
6.95579624176025
91.0646207013761
74.3721
75.0000
10.7098
178
1006
1
28.0408
0.3294
G
1.1526
101.0408
100.0000
13.2202
49
7.89865398406982
87.6641244238583
74.0714
73.0000
9.7761
188
1007
1
14.6471
0.1721
L
0.9893
90.6471
89.0000
11.2456
34
6.57952451705933
91.6280490034851
76.2967
76.0000
10.4187
188
1008
1
14864.9170
174.6190
G
161.0433
14942.9170
5787.0000
16129.2080
170
14.7122640609741
92.7881740390687
78.5667
78.0000
9.8588
124
1009
1
406.8495
4.7793
G
5.3390
481.8495
534.0000
201.2305
93
10.8816947937012
90.2504666980925
75.2373
75.0000
10.1670
183
1010
1
519.7045
6.1050
G
6.5405
594.7045
703.0000
276.6063
88
10.5851345062256
90.9258239645204
75.4138
75.0000
10.6172
180
1011
1
108.3457
1.2727
G
2.0862
181.3457
192.0000
40.0053
81
10.1554126739502
86.9258950567867
74.6209
73.0000
9.2839
188
1012
1
105.1410
1.2351
G
1.9460
181.1410
191.0000
48.4923
78
9.96557521820068
93.0815783966986
74.3571
76.0000
11.3877
188
1013
1
46.6757
0.5483
G
1.3676
120.6757
119.0000
16.6540
74
9.70668506622314
88.2410845684938
74.5549
74.0000
9.4941
188
1014
1
25.2813
0.2970
G
1.1203
99.2813
99.0000
12.7873
64
9.02703380584717
88.6204953749469
74.4341
74.0000
9.7470
188
1015
1
15735.7666
184.8489
G
162.3194
15815.7666
11796.0000
15808.7314
126
12.6660251617432
97.436057774155
79.6813
80.0000
11.6240
188
1016
1
28.9057
0.3396
G
1.1704
104.9057
104.0000
14.4982
53
8.21472454071045
89.6342039271447
76.3352
76.0000
9.0895
188
1017
1
14.3043
0.1680
G
1.0058
89.3043
90.0000
11.8594
46
7.65303993225098
88.7921223183596
75.1602
75.0000
9.1947
187
1018
1
6.0909
0.0716
L
0.8926
81.0909
80.0000
10.7361
88
10.5851345062256
90.8456621067987
74.5208
75.0000
10.5638
200
1019
1
5.0556
0.0594
L
0.8723
77.0556
78.0000
12.2110
36
6.7702751159668
88.3346163073239
73.7000
72.0000
10.8897
176
1020
1
41.7018
0.4899
G
1.2856
117.7018
119.0000
14.1755
57
8.51907634735107
91.550841743349
75.7836
76.0000
10.3672
177
Total number of rows:
54359
Table truncated, full table size
6567 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM128608.TXT.gz
2.6 Mb
(ftp)
(http)
TXT
Processed data included within Sample table
Processed data provided as supplementary file
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