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GEO accession:
Sample GSM128616
Query DataSets for GSM128616
Status
Public on Mar 23, 2015
Title
1586_d_2
Sample type
RNA
Source name
biopsy, during treatment, carbon-ion radiotherapy
Organism
Homo sapiens
Characteristics
female, cervical cancer
Extracted molecule
total RNA
Extraction protocol
ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label
Cy5
Label protocol
http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
Hybridization protocol
http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol
http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description
during treatment, carbon-ion radiotherapy
Data processing
global median normalization
Submission date
Aug 15, 2006
Last update date
Mar 23, 2015
Contact name
Shuhei Noda
E-mail(s)
s_noda@nirs.go.jp
Organization name
National institute of radiological sciences
Department
Frontier research center
Street address
Anagawa 4-9-1
City
Chiba
State/province
Chiba
ZIP/Postal code
2658333
Country
Japan
Platform ID
GPL2895
Series (1)
GSE6213
Cervical cancer samples in NIRS
Data table header descriptions
ID_REF
Array
Logical array
Raw_intensity
Raw signal intensity value
VALUE
Median normalized signal intensity value
Quality_flag
CodeLink quality flag
Signal_strength
Signal strength
Spot_mean
Spot median
Spot_median
Spot median
Spot_stdev
Spot standard deviation
Spot_area
Spot area
Spot_diameter
Spot diameter
Spot_noise_level
Spot noise level
Bkgd_mean
Background mean
Bkgd_median
Background median
Bkgd_stdev
Background standard deviation
Bkgd_area
Background area
Data table
ID_REF
Array
Raw_intensity
VALUE
Quality_flag
Signal_strength
Spot_mean
Spot_median
Spot_stdev
Spot_area
Spot_diameter
Spot_noise_level
Bkgd_mean
Bkgd_median
Bkgd_stdev
Bkgd_area
1001
1
11257.7705
136.7490
G
116.1858
11337.7705
4512.0000
12425.0596
159
14.2283201217651
97.5830816376544
80.7083
80.0000
11.7221
124
1002
1
599.7738
7.2855
G
6.9734
679.7738
842.0000
310.2039
84
10.3417663574219
97.4810694417805
80.8249
80.0000
11.6540
183
1003
1
0.4200
0.0051
L
0.8018
82.4200
81.0000
11.0074
50
7.97884559631348
102.792609876394
82.9815
82.0000
13.8617
112
1004
1
16.3646
0.1988
L
0.9773
96.3646
98.0000
17.4655
96
11.0558128356934
98.6005870796492
81.6824
80.0000
12.4004
176
1005
1
1.6860
0.0205
L
0.8364
85.6860
86.0000
11.5711
86
10.4641580581665
102.451363239245
84.2412
84.0000
12.3009
176
1006
1
21.9375
0.2665
G
1.0395
106.9375
100.0000
30.2184
64
9.02703380584717
102.871394468254
86.6833
85.0000
11.9143
124
1007
1
23.7619
0.2886
L
0.9836
106.7619
93.0000
31.6628
63
8.95623207092285
108.54333006946
86.6833
83.0000
17.0289
124
1008
1
11769.4121
142.9640
G
107.7459
11855.4121
6989.0000
11794.3867
162
14.3619222640991
110.031225843017
90.1583
86.0000
16.0208
124
1009
1
290.1798
3.5248
G
3.5540
375.1798
416.0000
125.7846
89
10.6451082229614
105.564672143811
87.1758
85.0000
13.7098
188
1010
1
607.2727
7.3766
G
6.2424
692.2727
806.0000
312.9777
88
10.5851345062256
110.898287524869
87.5934
85.0000
17.2655
188
1011
1
107.2436
1.3027
G
1.9017
189.2436
193.0000
43.0986
78
9.96557521820068
99.5125144568276
82.8400
82.0000
11.6750
181
1012
1
111.7848
1.3579
G
1.9143
191.7848
196.0000
43.7882
79
10.0292530059814
100.185352743511
83.0714
80.0000
13.4569
188
1013
1
40.0517
0.4865
G
1.2079
124.0517
125.0000
12.9194
58
8.59348011016846
102.701500638935
85.1154
84.0000
12.4677
188
1014
1
21.3846
0.2598
L
0.9534
107.3846
104.0000
15.2208
39
7.04672574996948
112.627817891522
90.6044
86.0000
17.7519
188
1015
1
11315.3760
137.4488
G
105.1230
11404.3760
6450.0000
11556.6934
135
13.1105813980103
108.486019780412
89.4066
89.0000
12.9907
188
1016
1
62.6136
0.7606
G
1.2550
151.6136
151.0000
20.2453
44
7.48482084274292
120.811990356146
92.6429
89.0000
21.2080
188
1017
1
27.8444
0.3382
G
1.0941
118.8444
119.0000
11.5681
45
7.56939744949341
108.621231325302
90.7857
91.0000
11.7475
188
1018
1
36.0204
0.4375
G
1.1891
120.0204
117.0000
17.6375
49
7.89865398406982
100.936127585625
85.1374
84.0000
11.2908
188
1019
1
22.6304
0.2749
G
1.0680
106.6304
104.0000
13.4639
46
7.65303993225098
99.8403297468924
84.9396
84.0000
10.5602
188
1020
1
39.9143
0.4848
G
1.0037
130.9143
134.0000
17.0619
35
6.67558097839355
130.430467978467
97.1978
91.0000
26.2870
188
Total number of rows:
54359
Table truncated, full table size
6570 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM128616.TXT.gz
2.6 Mb
(ftp)
(http)
TXT
Processed data included within Sample table
Processed data provided as supplementary file
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