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Sample GSM128943 Query DataSets for GSM128943
Status Public on Sep 28, 2010
Title 2515_p_2
Sample type RNA
 
Source name biopsy, prior to treatment, carbon-ion radiotherapy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, carbon-ion radiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Sep 28, 2010
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE20167 Gene expression profiles of cervical cancers for novel molecular classification

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE Median normalized signal intensity value
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area
1001 1 6563.6396 121.3882 G 65.6257 6651.6396 4865.0000 6154.2026 149 13.7736234664917 101.357293284445 88.1083 88.0000 8.9049 124
1002 1 275.7381 5.0995 G 3.4885 364.7381 400.0000 108.1562 84 10.3417663574219 104.554224661982 88.9176 89.0000 10.3695 188
1003 1 25.2281 0.4666 G 1.0881 116.2281 117.0000 11.4815 57 8.51907634735107 106.815318037908 90.7253 91.0000 10.5435 188
1004 1 36.3684 0.6726 G 1.1980 124.3684 120.0000 17.3444 57 8.51907634735107 103.817098130875 89.0442 88.0000 10.5447 187
1005 1 24.6491 0.4559 G 1.1008 110.6491 110.0000 14.6545 57 8.51907634735107 100.517180331647 87.0659 86.0000 9.6781 188
1006 1 31.3692 0.5801 G 1.1605 118.3692 117.0000 14.6283 65 9.09728336334229 101.99643971438 87.6796 87.0000 9.9976 187
1007 1 33.0137 0.6106 G 1.1878 122.0137 121.0000 18.8727 73 9.64087581634521 102.722332943062 89.7079 89.0000 9.1482 184
1008 1 6449.7485 119.2819 G 63.6758 6537.7485 3262.0000 6323.9365 157 14.1385507583618 102.672420322055 88.5583 88.0000 9.7816 124
1009 1 356.4556 6.5923 G 4.3633 443.4556 486.0000 165.6825 90 10.7047443389893 101.633871453705 86.6667 87.0000 9.7559 186
1010 1 164.5696 3.0436 G 2.5018 250.5696 269.0000 69.4566 79 10.0292530059814 100.154972225372 86.5440 86.0000 9.4366 188
1011 1 40.4026 0.7472 G 1.2430 127.4026 125.0000 15.9783 77 9.90148735046387 102.492287116385 87.4033 87.0000 10.3282 187
1012 1 56.5072 1.0450 G 1.4089 144.5072 142.0000 22.3020 69 9.37302112579346 102.569855386883 87.7143 88.0000 9.7132 188
1013 1 27.4000 0.5067 G 1.1342 111.4000 111.0000 14.4348 65 9.09728336334229 98.220488582559 84.9777 84.0000 9.4803 185
1014 1 34.0806 0.6303 G 1.1907 119.0806 117.0000 14.2244 62 8.88486671447754 100.009474320958 84.9945 85.0000 10.0063 188
1015 1 6731.9365 124.5007 G 68.4253 6816.9365 4462.0000 6392.7510 159 14.2283201217651 99.6259638444665 85.0083 85.0000 9.7506 124
1016 1 82.2750 1.5216 G 1.7063 168.2750 173.0000 28.0833 80 10.0925302505493 98.621882960756 85.4286 86.0000 8.4146 188
1017 1 28.8143 0.5329 G 1.1410 111.8143 111.0000 12.3315 70 9.44069766998291 97.9956357983223 83.3611 83.0000 9.9971 186
1018 1 22.9833 0.4251 G 1.0902 107.9833 109.0000 7.9885 60 8.74038791656494 99.0507952670631 84.6484 85.0000 9.3672 188
1019 1 23.0923 0.4271 G 1.0897 108.0923 108.0000 11.6378 65 9.09728336334229 99.192083746568 85.7253 85.0000 9.4614 188
1020 1 38.8873 0.7192 G 1.2513 123.8873 121.0000 17.0249 71 9.50789165496826 99.0055430184109 85.1878 85.0000 9.3370 187

Total number of rows: 54359

Table truncated, full table size 6558 Kbytes.




Supplementary file Size Download File type/resource
GSM128943.TXT.gz 2.5 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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