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Sample GSM1364047 Query DataSets for GSM1364047
Status Public on Apr 08, 2014
Title P0 Quadriceps Klhl40 WT 3
Sample type RNA
 
Source name WT 3 Quadriceps
Organism Mus musculus
Characteristics strain: C57BL/6
genotype: wildtype
age: 0 days
tissue: muscle
muscle type: Quadriceps
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent in accordance with the prescribed protocol. Quality control was performed with Agilent Bioanalyser.
Label Cy3
Label protocol Cy3-labeled cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Data processing The data were normalised using quantile normalisation with IlluminaGUI in R
 
Submission date Apr 07, 2014
Last update date Apr 08, 2014
Contact name Ankit Garg
E-mail(s) ankitgarg2025@gmail.com
Organization name UT Southwestern Medical Center
Department Molecular Biology
Lab Eric N. Olson
Street address 6000 Harry Hines Blvd, NA 8.500
City Dallas
State/province TX
ZIP/Postal code 75235
Country USA
 
Platform ID GPL6887
Series (1)
GSE56570 Comparison of genes regulated in P0 Klhl40 WT and KO skeletal muscle

Data table header descriptions
ID_REF
VALUE quantile normalized signal
WT3.Avg_NBEADS
WT3.BEAD_STDERR
WT3.Detection Pval

Data table
ID_REF VALUE WT3.Avg_NBEADS WT3.BEAD_STDERR WT3.Detection Pval
ILMN_2735294 138.1135 50 3.100926 0.001068376
ILMN_2417611 103.9955 45 2.405814 0.5694444
ILMN_2545897 168.8009 54 4.588452 0
ILMN_2762289 115.8739 48 2.427552 0.06196581
ILMN_1248788 109.9154 34 2.780013 0.2008547
ILMN_2707227 112.5085 29 2.816134 0.1271368
ILMN_2896528 3053.617 53 106.2704 0
ILMN_2721178 831.8515 46 30.60318 0
ILMN_1227723 365.1177 38 12.80593 0
ILMN_2458837 96.4623 36 2.836378 0.9711539
ILMN_3033922 1468.678 34 38.12626 0
ILMN_3092673 6322.239 53 136.474 0
ILMN_1230777 3653.576 42 135.5706 0
ILMN_2730714 2286.166 38 66.71004 0
ILMN_1246069 3884.818 40 176.6266 0
ILMN_1232042 109.7628 52 2.60611 0.2029915
ILMN_1243193 523.0523 37 27.47763 0
ILMN_2524361 105.7446 54 1.799963 0.4038461
ILMN_1233188 191.3639 48 5.51611 0
ILMN_2543688 852.1729 54 28.22157 0

Total number of rows: 45281

Table truncated, full table size 1833 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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