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Sample GSM1364050 Query DataSets for GSM1364050
Status Public on Apr 08, 2014
Title P0 Quadriceps Klhl40 KO 3
Sample type RNA
 
Source name KO 3 Quadriceps
Organism Mus musculus
Characteristics strain: C57BL/6
genotype: Klhl40 knock out
age: 0 days
tissue: muscle
muscle type: Quadriceps
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent in accordance with the prescribed protocol. Quality control was performed with Agilent Bioanalyser.
Label Cy3
Label protocol Cy3-labeled cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Data processing The data were normalised using quantile normalisation with IlluminaGUI in R
 
Submission date Apr 07, 2014
Last update date Apr 08, 2014
Contact name Ankit Garg
E-mail(s) ankitgarg2025@gmail.com
Organization name UT Southwestern Medical Center
Department Molecular Biology
Lab Eric N. Olson
Street address 6000 Harry Hines Blvd, NA 8.500
City Dallas
State/province TX
ZIP/Postal code 75235
Country USA
 
Platform ID GPL6887
Series (1)
GSE56570 Comparison of genes regulated in P0 Klhl40 WT and KO skeletal muscle

Data table header descriptions
ID_REF
VALUE quantile normalized signal
KO3.Avg_NBEADS
KO3.BEAD_STDERR
KO3.Detection Pval

Data table
ID_REF VALUE KO3.Avg_NBEADS KO3.BEAD_STDERR KO3.Detection Pval
ILMN_2735294 147.1351 64 3.709947 0
ILMN_2417611 104.0099 57 1.911108 0.5630342
ILMN_2545897 159.6124 64 3.133708 0
ILMN_2762289 113.0466 46 2.713131 0.1004274
ILMN_1248788 110.2864 29 3.294901 0.167735
ILMN_2707227 111.4735 44 2.03127 0.1356838
ILMN_2896528 2805.628 50 72.6717 0
ILMN_2721178 823.2724 58 20.66549 0
ILMN_1227723 392.0102 44 13.89694 0
ILMN_2458837 100.6766 57 1.61865 0.823718
ILMN_3033922 1469.619 35 55.83607 0
ILMN_3092673 5723.433 51 171.4815 0
ILMN_1230777 3172.847 61 113.2573 0
ILMN_2730714 2696.847 46 89.13055 0
ILMN_1246069 4074.961 55 171.2996 0
ILMN_1232042 103.4072 49 2.408558 0.6185898
ILMN_1243193 565.1985 51 18.85403 0
ILMN_2524361 101.7639 51 2.06913 0.7382479
ILMN_1233188 175.3828 59 4.894601 0
ILMN_2543688 721.6356 44 30.21278 0

Total number of rows: 45281

Table truncated, full table size 1841 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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