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GEO accession:
Sample GSM136412
Query DataSets for GSM136412
Status
Public on Sep 30, 2007
Title
LCM tumor epithelium sample from patient #25
Sample type
RNA
Source name
human breast cancer tumor epithelium
Organism
Homo sapiens
Characteristics
diagnosis: non-IBC
status: Deceased
patient_id: 25
race: European American
tnm_stage: IIB
er_status: NEG
tissue: Tumor
Extracted molecule
total RNA
Extraction protocol
PicoPure kit (Arcturus)
Label
biotin
Label protocol
Small Sample Labeling Protocol vII from Affymetrix
Hybridization protocol
Standard Affy protocol
Scan protocol
Standard Affy protocol
Description
Chemo: No, ER: NEG, Her2Neu: NEG, Stage: IIB, Cyclin E: NEG
Data processing
RMA
Submission date
Sep 15, 2006
Last update date
Feb 17, 2016
Contact name
Stefan Ambs
Organization name
NCI
Lab
LHC
Street address
37 Convent Dr Bldg 37 Room 3050
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Platform ID
GPL96
Series (1)
GSE5847
Tumor and stroma from breast by LCM
Relations
Reanalyzed by
GSE47561
Data table header descriptions
ID_REF
Affy ID
VALUE
RMA log 2 expression levels
Data table
ID_REF
VALUE
1007_s_at
9.804469027
1053_at
5.726440553
117_at
6.725075454
121_at
8.475521449
1255_g_at
4.231316696
1294_at
8.041970022
1316_at
6.978339691
1320_at
4.997990286
1405_i_at
6.399779521
1431_at
4.252505055
1438_at
6.950826547
1487_at
7.449681204
1494_f_at
6.671819742
1598_g_at
10.58344858
160020_at
8.057908635
1729_at
8.126765547
1773_at
5.187503031
177_at
5.609197243
179_at
8.627593404
1861_at
5.240261123
Total number of rows:
22283
Table truncated, full table size
496 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM136412.CEL.gz
3.3 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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