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Sample GSM1505374 Query DataSets for GSM1505374
Status Public on Dec 31, 2015
Title genomic DNA from PBMC osa7
Sample type genomic
 
Source name PBMC osa7
Organism Homo sapiens
Characteristics gender: Male
cell type: PBMC
disease state: OSA
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from PBMC samples using Qiagen DNeasy Kit according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridized to Illumina Infinium Human Methylation27 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description PBMC sample from OSA patients
Data processing BeadStudio software v3.2
 
Submission date Sep 16, 2014
Last update date Dec 31, 2015
Contact name Tingwen Chen
Organization name National Yang Ming Chiao Tung University
Street address No. 75, Boat Street, East District
City Hsinchu
ZIP/Postal code 300
Country Taiwan
 
Platform ID GPL8490
Series (1)
GSE61463 Epigenome analysis of peripheral blood mononuclear cell (PBMC) samples from obstructive sleep apnea patients and healthy subjects

Data table header descriptions
ID_REF
VALUE Average Beta
Detection Pval

Data table
ID_REF VALUE Detection Pval
cg00000292 0.8738739 3.68E-38
cg00002426 0.875969 4.08E-21
cg00003994 0.08545303 2.66E-32
cg00005847 0.1745081 3.68E-38
cg00006414 0.02825869 3.68E-38
cg00007981 0.1396972 3.68E-38
cg00008493 0.9873167 3.68E-38
cg00008713 0.01698778 3.68E-38
cg00009407 0.00684671 3.68E-38
cg00010193 0.5555505 3.68E-38
cg00011459 0.90934 1.00E-16
cg00012199 0.01388821 3.68E-38
cg00012386 0.04744317 3.68E-38
cg00012792 0.03902914 3.68E-38
cg00013618 0.7578773 3.68E-38
cg00014085 0.02620545 3.68E-38
cg00014837 0.872012 5.27E-14
cg00015770 0.1325917 3.68E-38
cg00016968 0.8728638 3.68E-38
cg00019495 0.335609 3.68E-38

Total number of rows: 27578

Table truncated, full table size 820 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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