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Sample GSM155285 Query DataSets for GSM155285
Status Public on Jun 09, 2008
Title SCC induced spontaneously in C3H/He mouse, 6hours after carbon-ion irradiation at 30Gy (c_nrs1_30_6h_2)
Sample type RNA
 
Source name Murine tumor
Organism Mus musculus
Characteristics Squamous cell carcinoma developed spontaneously in C3H/He mouse etablished by National Institute of Radiological Science, Chiba, Japan
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol CodeLink Gene Expression System: Manual Labelled cRNA Target Preparation
 
Hybridization protocol CodeLink Gene Expression System: Single-Assay Bioarray Hybridization and Detection
Scan protocol Scanning CodeLink Bioarrays on Agilent G2565 microarray scanner
Description 6hours after carbon-ion irradiation at 30Gy
Data processing global median normalization
 
Submission date Jan 15, 2007
Last update date Jun 02, 2008
Contact name Kazunori Nojiri
Organization name National Institute of Radiological Sciences
Street address 4-9-1, Anagawa, Inage-ku
City Chiba
ZIP/Postal code 263-8555
Country Japan
 
Platform ID GPL2897
Series (1)
GSE11629 Gene expression profiles of four murine tumors after carbon-ion (C-ion) or gamma irradiation.

Data table header descriptions
ID_REF
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 5969.7563 111.6444 G 65.6493 6048.7563 4857.0000 5647.3442 154 14.0028171539307 92.1374407858328 78.6134 79.0000 8.7583 123 111.6444
1002 1017.1719 19.0228 G 12.1309 1095.1719 1270.0000 505.4592 130 12.8655023574829 90.2796770698205 77.4286 78.0000 8.1865 123 19.0228
1003 15.0600 0.2816 G 1.0119 91.0600 91.0000 12.4055 50 7.97884559631348 89.9888559264828 77.0055 76.0000 9.3259 188 0.2816
1004 29.7444 0.5563 G 1.1919 107.7444 107.0000 12.4406 90 10.7047443389893 90.3963503245194 77.4500 78.0000 8.2642 124 0.5563
1005 329.0610 6.1540 G 4.4961 406.0610 463.0000 147.5273 82 10.2179079055786 90.3130586689642 76.9505 77.0000 8.8754 188 6.1540
1006 15.2000 0.2843 G 1.0301 91.2000 91.0000 10.8946 45 7.56939744949341 88.53484585174 76.6333 76.0000 8.3566 186 0.2843
1007 5688.3472 106.3816 G 66.3707 5762.3472 3191.0000 5637.5708 169 14.6689291000366 86.8206417014806 74.1765 74.0000 8.5471 123 106.3816
1008 5944.6797 111.1754 G 67.3795 6020.6797 4236.0000 5699.3584 158 14.1835060119629 89.3547777772116 76.5170 76.0000 8.9032 122 111.1754
1010 386.4508 7.2273 G 4.9999 465.4508 511.0000 161.7368 124 12.5650987625122 93.0911998434431 78.6833 79.0000 9.3941 124 7.2273
1012 351.6207 6.5759 G 4.7528 428.6207 475.0000 169.2610 87 10.5248203277588 90.1834275215927 77.2802 77.0000 8.7890 188 6.5759
1013 17.4138 0.3257 G 1.0471 93.4138 94.0000 12.6546 58 8.59348011016846 89.2100195152539 75.7967 76.0000 8.8067 188 0.3257
1014 6157.4580 115.1547 G 70.0207 6232.4580 4506.0000 5720.9058 157 14.1385507583618 89.008814468817 76.7155 75.0000 9.3392 120 115.1547
1015 6022.5669 112.6321 G 66.7342 6099.5669 5274.0000 5617.5337 152 13.9115924835205 91.4009253932555 77.6050 77.0000 9.6006 123 112.6321
1017 25.8983 0.4843 G 1.1352 101.8983 101.0000 17.5129 59 8.66724491119385 89.7589947487754 75.8352 76.0000 9.1727 188 0.4843
1018 19.4677 0.3641 G 1.0827 95.4677 96.0000 10.4012 62 8.88486671447754 88.1769578498973 75.7912 76.0000 8.1180 188 0.3641
1019 84.8219 1.5863 G 1.8170 160.8219 162.0000 33.8188 73 9.64087581634521 88.5074574870328 75.9890 76.0000 8.3383 188 1.5863
1020 17.9592 0.3359 G 1.0481 93.9592 92.0000 14.5546 49 7.89865398406982 89.6439535263012 76.6374 76.0000 9.0960 188 0.3359
1021 6027.1680 112.7181 G 69.0542 6103.1680 4364.0000 5729.1694 157 14.1385507583618 88.3823443559024 76.2308 76.0000 8.2549 121 112.7181
1022 6428.1655 120.2174 G 71.8018 6506.1655 4862.0000 5900.4458 165 14.4942932128906 90.6128137203201 78.1197 78.0000 8.4085 121 120.2174
1024 13.3239 0.2492 G 1.0003 90.3239 92.0000 11.8557 71 9.50789165496826 90.2966138002349 77.6951 77.0000 8.8644 84 0.2492

Total number of rows: 36227

Table truncated, full table size 4545 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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