NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM155412 Query DataSets for GSM155412
Status Public on Jun 09, 2008
Title Radiation induced C3H mouse Fibrosarcoma, 6hours after carbon-ion irradiation at 30Gy (c_8520_30_6h_1)
Sample type RNA
 
Source name Murine tumor
Organism Mus musculus
Characteristics Radiation induced C3H mouse Fibrosarcoma eatablished by National Institute of Radiological Science, Chiba, Japan
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol CodeLink Gene Expression System: Manual Labelled cRNA Target Preparation
 
Hybridization protocol CodeLink Gene Expression System: Single-Assay Bioarray Hybridization and Detection
Scan protocol Scanning CodeLink Bioarrays on Agilent G2565 microarray scanner
Description 6hours after carbon-ion irradiation at 30Gy
Data processing global median normalization
 
Submission date Jan 15, 2007
Last update date Jun 02, 2008
Contact name Kazunori Nojiri
Organization name National Institute of Radiological Sciences
Street address 4-9-1, Anagawa, Inage-ku
City Chiba
ZIP/Postal code 263-8555
Country Japan
 
Platform ID GPL2897
Series (1)
GSE11629 Gene expression profiles of four murine tumors after carbon-ion (C-ion) or gamma irradiation.

Data table header descriptions
ID_REF
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 15975.7686 126.5469 G 128.6766 16083.7686 3523.0000 19144.6895 188 15.4715557098389 124.993727699085 107.4833 108.0000 11.3292 124 126.5469
1002 2011.8762 15.9364 G 16.8474 2120.8762 2653.0000 1147.3837 107 11.6720447540283 125.887259488755 108.7607 109.0000 11.2582 169 15.9364
1003 31.1449 0.2467 G 1.1195 140.1449 137.0000 12.6643 69 9.37302112579346 125.190160756179 108.9598 109.0000 10.7934 180 0.2467
1004 74.1707 0.5875 G 1.5007 176.1707 177.0000 27.7470 82 10.2179079055786 117.389871771123 102.1593 102.0000 10.2599 188 0.5875
1005 164.5750 1.3036 G 2.2585 268.5750 287.0000 66.2272 80 10.0925302505493 118.918678616189 103.6538 104.0000 9.9458 188 1.3036
1006 13.8261 0.1095 L 0.9824 118.8261 120.0000 11.0322 46 7.65303993225098 120.954681255865 105.4231 105.0000 10.6365 188 0.1095
1007 15731.6094 124.6128 G 129.7020 15837.6094 3262.0000 18689.7676 189 15.5126485824585 122.10771978414 105.2083 106.0000 10.7385 124 124.6128
1008 14264.8330 112.9942 G 117.7101 14368.8330 3065.0000 17220.0449 170 14.7122640609741 122.069647595706 104.1583 104.0000 12.0464 124 112.9942
1010 519.6957 4.1166 G 5.2428 622.6957 733.0000 257.6171 92 10.8230323791504 118.771333660513 102.4269 103.0000 10.5142 177 4.1166
1012 651.6092 5.1615 G 6.4639 750.6092 896.0000 332.6404 87 10.5248203277588 116.12339487123 100.5110 99.0000 11.4156 188 5.1615
1013 41.8194 0.3313 G 1.2182 147.8194 147.0000 16.4531 72 9.57461452484131 121.340409048516 105.8011 106.0000 10.2269 187 0.3313
1014 15360.9180 121.6765 G 122.6317 15467.9180 3462.0000 18667.7891 173 14.8415107727051 126.13308218838 109.4917 107.0000 12.7554 124 121.6765
1015 14613.3887 115.7552 G 118.6930 14720.3887 2702.0000 17894.7656 172 14.7985544204712 124.020720784536 106.2250 107.0000 11.3471 124 115.7552
1017 95.4737 0.7563 G 1.6771 198.4737 206.0000 39.0386 76 9.83698177337646 118.346039846696 104.0934 103.0000 10.2307 188 0.7563
1018 29.1607 0.2310 G 1.1084 132.1607 132.0000 14.5722 56 8.444016456604 119.238457559814 103.7582 103.0000 10.8256 188 0.2310
1019 70.5075 0.5585 G 1.4879 170.5075 171.0000 22.9317 67 9.23618125915527 114.59419312185 100.9505 100.0000 9.7295 188 0.5585
1020 34.6129 0.2742 G 1.1683 132.6129 134.0000 13.0190 62 8.88486671447754 113.506341865577 98.5110 98.0000 10.3376 188 0.2742
1021 14293.8867 113.2244 G 121.5969 14396.8867 2665.0000 17831.3594 178 15.0544557571411 118.398452599083 102.8417 103.0000 10.2656 124 113.2244
1022 16790.1172 132.9975 G 143.5670 16891.1172 6848.0000 18433.0371 146 13.6342573165894 117.653225462745 101.0769 101.0000 11.1022 188 132.9975
1024 21.5745 0.1709 G 1.0562 127.5745 129.0000 12.6756 47 7.73577785491943 120.788405095683 106.7500 106.0000 9.8589 186 0.1709

Total number of rows: 36227

Table truncated, full table size 4614 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap