NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM157705 Query DataSets for GSM157705
Status Public on Mar 23, 2015
Title Mammary Carcinoma induced spontaneously in C3H/He mouse, 1 day after carbon-ion irradiation at 30Gy (c_mmca_30_d1_1)
Sample type RNA
 
Source name Murine tumor
Organism Mus musculus
Characteristics Mammary Carcinoma developed spontaneously in C3H/He mouse etablished by Dr. L. Milas from the University of Texas, M. D. Anderson Cancer Center, Huston, USA
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol CodeLink Gene Expression System: Manual Labelled cRNA Target Preparation
 
Hybridization protocol CodeLink Gene Expression System: Single-Assay Bioarray Hybridization and Detection
Scan protocol Scanning CodeLink Bioarrays on Agilent G2565 microarray scanner
Description 1day after carbon-ion irradiation at 30Gy
Data processing global median normalization
 
Submission date Jan 23, 2007
Last update date Mar 23, 2015
Contact name Kazunori Nojiri
Organization name National Institute of Radiological Sciences
Street address 4-9-1, Anagawa, Inage-ku
City Chiba
ZIP/Postal code 263-8555
Country Japan
 
Platform ID GPL2897
Series (1)
GSE15362 Radiation-induced genes expressed in six murine tumors.

Data table header descriptions
ID_REF
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 14921.3125 121.9342 G 169.9410 14996.3125 3042.0000 18248.3457 194 15.7165031433105 88.2442239352717 76.5833 75.0000 8.8295 124 121.9342
1002 4906.3677 40.0939 G 55.1407 4981.3677 4841.0000 4123.6660 138 13.2554540634155 90.3391651167791 76.6000 75.0000 10.2261 124 40.0939
1003 144.7882 1.1832 G 2.4825 220.7882 238.0000 52.8084 85 10.4031419754028 88.9395660458541 75.9181 76.0000 8.6264 177 1.1832
1004 80.6750 0.6593 G 1.7268 156.6750 160.0000 28.3552 80 10.0925302505493 90.7314832131057 76.9011 76.0000 9.8210 188 0.6593
1005 16.8125 0.1374 G 1.0274 90.8125 91.0000 8.4967 48 7.81764030456543 88.3908833490284 75.3526 74.0000 9.5939 179 0.1374
1006 27.9048 0.2280 G 1.1780 101.9048 103.0000 12.4221 63 8.95623207092285 86.5092001381979 74.4945 74.0000 8.3395 188 0.2280
1007 14504.0830 118.5247 G 156.6250 14582.0830 3286.0000 18028.4316 194 15.7165031433105 93.101895792081 77.6917 78.0000 10.0679 124 118.5247
1008 12933.7656 105.6924 G 143.5336 13009.7656 1865.0000 16759.0820 181 15.1807889938354 90.6391552586535 76.6917 76.0000 9.7594 124 105.6924
1010 347.2989 2.8381 G 4.5906 425.2989 481.0000 162.1942 87 10.5248203277588 92.6460641413953 78.2965 78.0000 9.7640 178 2.8381
1012 580.8804 4.7468 G 7.4477 656.8804 783.0000 338.0988 92 10.8230323791504 88.1991272911105 75.3571 76.0000 8.1328 188 4.7468
1013 26.9524 0.2202 G 1.1364 101.9524 100.0000 12.4025 63 8.95623207092285 89.71556119318 76.2308 75.0000 9.8104 188 0.2202
1014 12585.7441 102.8484 G 144.6657 12660.7441 1469.0000 16744.5469 186 15.3890399932861 87.5172614998086 75.2167 75.0000 8.3448 124 102.8484
1015 13287.9502 108.5867 G 147.1598 13365.9502 1859.0000 17198.8691 181 15.1807889938354 90.8260932274258 78.7917 78.0000 8.5507 124 108.5867
1017 34.9310 0.2855 G 1.2263 108.9310 107.0000 13.4995 58 8.59348011016846 88.8266626642912 75.3208 74.0000 9.8844 165 0.2855
1018 129.4211 1.0576 G 2.3098 204.4211 214.0000 53.6544 76 9.83698177337646 88.5025409523609 75.6496 75.0000 9.0017 141 1.0576
1019 145.6883 1.1905 G 2.4294 222.6883 233.0000 53.8929 77 9.90148735046387 91.6643094261422 76.7529 77.0000 9.7762 176 1.1905
1020 20.0000 0.1634 G 1.0711 97.0000 95.0000 10.7581 53 8.21472454071045 90.5591604712222 77.6484 77.0000 9.0394 188 0.1634
1021 15754.7129 128.7446 G 141.5701 15830.7129 5809.0000 17358.3652 152 13.9115924835205 111.822457063726 78.4750 76.0000 23.8816 124 128.7446
1022 12537.6396 102.4553 G 143.2396 12613.6396 1410.0000 16661.8242 185 15.3476161956787 88.0597374189454 77.0818 76.0000 8.0398 114 102.4553
1024 13.1333 0.1073 G 1.0249 85.1333 86.0000 8.4396 45 7.56939744949341 83.0647259196089 73.1657 72.0000 7.3765 181 0.1073

Total number of rows: 36227

Table truncated, full table size 4585 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap