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Sample GSM157712 Query DataSets for GSM157712
Status Public on Mar 23, 2015
Title Mammary Carcinoma induced spontaneously in C3H/He mouse, 20 days after carbon-ion irradiation at 30Gy (c_mmca_30_d20_2)
Sample type RNA
 
Source name Murine tumor
Organism Mus musculus
Characteristics Mammary Carcinoma developed spontaneously in C3H/He mouse etablished by Dr. L. Milas from the University of Texas, M. D. Anderson Cancer Center, Huston, USA
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol CodeLink Gene Expression System: Manual Labelled cRNA Target Preparation
 
Hybridization protocol CodeLink Gene Expression System: Single-Assay Bioarray Hybridization and Detection
Scan protocol Scanning CodeLink Bioarrays on Agilent G2565 microarray scanner
Description 20days after carbon-ion irradiation at 30Gy
Data processing global median normalization
 
Submission date Jan 23, 2007
Last update date Mar 23, 2015
Contact name Kazunori Nojiri
Organization name National Institute of Radiological Sciences
Street address 4-9-1, Anagawa, Inage-ku
City Chiba
ZIP/Postal code 263-8555
Country Japan
 
Platform ID GPL2897
Series (1)
GSE15362 Radiation-induced genes expressed in six murine tumors.

Data table header descriptions
ID_REF
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 16125.8721 116.6509 G 172.5888 16203.8721 3952.0000 19191.9238 189 15.5126485824585 93.8871803413682 78.9333 78.0000 10.5915 124 116.6509
1002 3431.3359 24.8215 G 39.9487 3507.3359 3848.0000 2732.7168 136 13.1590490341187 87.7959130744834 75.9917 76.0000 7.8639 124 24.8215
1003 60.4872 0.4376 G 1.5343 135.4872 138.0000 19.9915 78 9.96557521820068 88.3048576849505 74.6593 75.0000 8.8699 188 0.4376
1004 60.8608 0.4403 G 1.5414 136.8608 137.0000 21.5005 79 10.0292530059814 88.7904182836269 75.8516 76.0000 8.5269 188 0.4403
1005 22.4821 0.1626 G 1.0938 98.4821 97.0000 10.1189 56 8.444016456604 90.039105790884 76.0769 76.0000 9.3594 188 0.1626
1006 14.6563 0.1060 L 0.9267 91.6563 96.0000 14.0859 32 6.38307666778564 98.9084315157952 78.0055 77.0000 14.6056 188 0.1060
1007 16757.8848 121.2228 G 183.1880 16834.8848 5651.0000 19291.5156 184 15.306079864502 91.8994783268978 78.7458 77.0000 9.9330 122 121.2228
1008 14416.4941 104.2857 G 159.1937 14494.4941 2493.0000 18015.9746 178 15.0544557571411 91.0493971918315 78.5167 78.0000 8.6996 124 104.2857
1010 629.2609 4.5519 G 7.6233 707.2609 830.0000 313.6024 92 10.8230323791504 92.776792915396 78.6978 78.0000 9.8512 188 4.5519
1012 868.0795 6.2795 G 9.1871 943.0795 1110.0000 434.1125 88 10.5851345062256 102.653120076335 79.5275 75.0000 18.4354 188 6.2795
1013 37.4493 0.2709 G 1.2468 114.4493 111.0000 16.1007 69 9.37302112579346 91.7931428069881 77.5055 77.0000 9.8621 188 0.2709
1014 15864.0703 114.7571 G 172.0559 15943.0703 5079.0000 18447.8047 172 14.7985544204712 92.6621742940423 79.0924 79.0000 9.1081 123 114.7571
1015 15181.9102 109.8225 G 161.2381 15262.9102 2968.0000 18876.4941 180 15.1387948989868 94.6607022552217 80.2917 81.0000 9.1071 124 109.8225
1017 177.1084 1.2812 G 2.7810 255.1084 275.0000 73.5534 83 10.2800235748291 91.731290993404 79.0655 78.0000 9.1542 174 1.2812
1018 48.6308 0.3518 G 1.3654 128.6308 128.0000 16.7024 65 9.09728336334229 94.208912815337 79.9489 80.0000 9.4726 182 0.3518
1019 211.1573 1.5275 G 3.1660 290.1573 327.0000 107.1341 89 10.6451082229614 91.6486834606315 79.7363 79.0000 8.4325 188 1.5275
1020 31.0882 0.2249 G 1.1695 110.0882 109.0000 11.6477 68 9.30485343933105 94.1319106762782 79.3956 79.0000 10.0879 188 0.2249
1021 15413.4189 111.4972 G 161.2908 15490.4189 3833.0000 18502.5117 174 14.8843431472778 96.0403392470127 79.4167 77.0000 12.6936 124 111.4972
1022 14325.5732 103.6280 G 161.8581 14400.5732 2312.0000 18529.0879 187 15.4303531646729 88.970362568786 75.1250 75.0000 9.3136 124 103.6280
1024 9.1389 0.0661 L 0.9448 85.1389 85.0000 9.3783 36 6.7702751159668 90.1150159026854 75.5028 76.0000 9.4100 187 0.0661

Total number of rows: 36227

Table truncated, full table size 4598 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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