NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1675079 Query DataSets for GSM1675079
Status Public on May 06, 2015
Title becic-00235: PN40: HG_U95C
Sample type RNA
 
Source name P40_prostate_cancer
Organism Homo sapiens
Characteristics Sex: male
age: --
diseasestate: Prostate_Adenocarcinoma
tumorgrading: Gleason_Score_6
diseasestaging: pT T3a, pN N0, pM MX
organismpart: Prostate
histology: ALI unknown, ECI focal, SVI no, SMI yes
prostatetissue: adjacent normal
Biomaterial provider University of Pittsburgh, Department of Pathology
Extracted molecule total RNA
Extraction protocol See mage-tab files linked to series entry for additional details
Label biotin
Label protocol See mage-tab files linked to series entry for additional details
 
Hybridization protocol See mage-tab files linked to series entry for additional details
Scan protocol See mage-tab files linked to series entry for additional details
Data processing See mage-tab files linked to series entry for additional details
 
Submission date May 05, 2015
Last update date May 06, 2015
Contact name Mervi Heiskanen
E-mail(s) mervi.heiskanen@nih.gov
Phone 2402765175
Organization name NCI
Department CBIIT
Street address 9609 Medical Center Drive, 1W378
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platform ID GPL93
Series (1)
GSE68555 caArray_becic-00235: Gene expression alterations in prostate cancer predicting tumor aggression and preceding development of malignancy

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 190.03 A 0.52976
AFFX-MurIL10_at 146.516 A 0.574038
AFFX-MurIL4_at 44.2967 A 0.760937
AFFX-MurFAS_at 206.833 A 0.275146
AFFX-BioB-5_at 5140.23 P 0.000258358
AFFX-BioB-M_at 9225.48 P 4.42873e-05
AFFX-BioB-3_at 5699 P 4.42873e-05
AFFX-BioC-5_at 7570.74 P 6.02111e-05
AFFX-BioC-3_at 5529.89 P 6.02111e-05
AFFX-BioDn-5_at 6342.26 P 4.42873e-05
AFFX-BioDn-3_at 29330.5 P 6.02111e-05
AFFX-CreX-5_at 61009.9 P 4.42873e-05
AFFX-CreX-3_at 56929.3 P 4.42873e-05
AFFX-BioB-5_st 338.436 A 0.102165
AFFX-BioB-M_st 610.479 P 0.0239288
AFFX-BioB-3_st 564.394 A 0.123572
AFFX-BioC-5_st 31.3881 A 0.937071
AFFX-BioC-3_st 99.9481 A 0.41138
AFFX-BioDn-5_st 397.637 A 0.139482
AFFX-BioDn-3_st 682.193 P 0.00227496

Total number of rows: 12646

Table truncated, full table size 351 Kbytes.




Supplementary file Size Download File type/resource
GSM1675079_PN40_u95c.CEL.gz 2.6 Mb (ftp)(http) CEL
GSM1675079_PN40_u95cmas5.CHP.gz 4.4 Mb (ftp)(http) CHP
GSM1675079_PN40_u95cmas5.CHP.txt.gz 128.9 Kb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap