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Sample GSM1675112 Query DataSets for GSM1675112
Status Public on May 06, 2015
Title becic-00235: PN53: HG_U95C
Sample type RNA
 
Source name P53_prostate_cancer
Organism Homo sapiens
Characteristics Sex: male
age: --
diseasestate: Prostate_Adenocarcinoma
tumorgrading: Gleason_Score_6
diseasestaging: pT T2b, pN N0, pM MX
organismpart: Prostate
histology: ALI unknown, ECI no, SVI no, SMI no
prostatetissue: adjacent normal
Biomaterial provider University of Pittsburgh, Department of Pathology
Extracted molecule total RNA
Extraction protocol See mage-tab files linked to series entry for additional details
Label biotin
Label protocol See mage-tab files linked to series entry for additional details
 
Hybridization protocol See mage-tab files linked to series entry for additional details
Scan protocol See mage-tab files linked to series entry for additional details
Data processing See mage-tab files linked to series entry for additional details
 
Submission date May 05, 2015
Last update date May 06, 2015
Contact name Mervi Heiskanen
E-mail(s) mervi.heiskanen@nih.gov
Phone 2402765175
Organization name NCI
Department CBIIT
Street address 9609 Medical Center Drive, 1W378
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platform ID GPL93
Series (1)
GSE68555 caArray_becic-00235: Gene expression alterations in prostate cancer predicting tumor aggression and preceding development of malignancy

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 157.751 A 0.737173
AFFX-MurIL10_at 76.9005 A 0.659339
AFFX-MurIL4_at 128.659 A 0.116113
AFFX-MurFAS_at 70.6078 A 0.52976
AFFX-BioB-5_at 1335.76 P 0.00179591
AFFX-BioB-M_at 2017.59 P 0.000169227
AFFX-BioB-3_at 1296.04 P 0.0012475
AFFX-BioC-5_at 3470.07 P 0.000126798
AFFX-BioC-3_at 2494.08 P 6.02111e-05
AFFX-BioDn-5_at 2662.11 P 8.14279e-05
AFFX-BioDn-3_at 16728.5 P 7.00668e-05
AFFX-CreX-5_at 28812.3 P 4.42873e-05
AFFX-CreX-3_at 48885.3 P 4.42873e-05
AFFX-BioB-5_st 70.7424 A 0.470241
AFFX-BioB-M_st 72.6656 A 0.824672
AFFX-BioB-3_st 61.4931 A 0.897835
AFFX-BioC-5_st 29.4859 A 0.904333
AFFX-BioC-3_st 29.9485 A 0.783476
AFFX-BioDn-5_st 221.287 A 0.275146
AFFX-BioDn-3_st 259.013 A 0.340661

Total number of rows: 12646

Table truncated, full table size 352 Kbytes.




Supplementary file Size Download File type/resource
GSM1675112_PN53_u95c.CEL.gz 2.6 Mb (ftp)(http) CEL
GSM1675112_PN53_u95cmas5.CHP.gz 4.6 Mb (ftp)(http) CHP
GSM1675112_PN53_u95cmas5.CHP.txt.gz 128.8 Kb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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