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Sample GSM1675155 Query DataSets for GSM1675155
Status Public on May 06, 2015
Title becic-00235: PN69: HG_U95C
Sample type RNA
 
Source name P69_prostate_cancer
Organism Homo sapiens
Characteristics Sex: male
age: --
diseasestate: Prostate_Adenocarcinoma
tumorgrading: Gleason_Score_6
diseasestaging: pT T3a, pN N0, pM MX
organismpart: Prostate
histology: ALI unknown, ECI multifocal, SVI no, SMI yes
prostatetissue: adjacent normal
Biomaterial provider University of Pittsburgh, Department of Pathology
Extracted molecule total RNA
Extraction protocol See mage-tab files linked to series entry for additional details
Label biotin
Label protocol See mage-tab files linked to series entry for additional details
 
Hybridization protocol See mage-tab files linked to series entry for additional details
Scan protocol See mage-tab files linked to series entry for additional details
Data processing See mage-tab files linked to series entry for additional details
 
Submission date May 05, 2015
Last update date May 06, 2015
Contact name Mervi Heiskanen
E-mail(s) mervi.heiskanen@nih.gov
Phone 2402765175
Organization name NCI
Department CBIIT
Street address 9609 Medical Center Drive, 1W378
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platform ID GPL93
Series (1)
GSE68555 caArray_becic-00235: Gene expression alterations in prostate cancer predicting tumor aggression and preceding development of malignancy

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 35.25 A 0.891021
AFFX-MurIL10_at 46.1945 A 0.60308
AFFX-MurIL4_at 41.9462 A 0.58862
AFFX-MurFAS_at 28.2362 A 0.794268
AFFX-BioB-5_at 1552.27 P 0.000662269
AFFX-BioB-M_at 3135.78 P 8.14279e-05
AFFX-BioB-3_at 1988.86 P 0.000296708
AFFX-BioC-5_at 3378.3 P 9.4506e-05
AFFX-BioC-3_at 4112.2 P 5.16732e-05
AFFX-BioDn-5_at 4139.47 P 4.42873e-05
AFFX-BioDn-3_at 20924.2 P 5.16732e-05
AFFX-CreX-5_at 39391.5 P 4.42873e-05
AFFX-CreX-3_at 62235.2 P 4.42873e-05
AFFX-BioB-5_st 124.408 A 0.354453
AFFX-BioB-M_st 53.8489 A 0.783476
AFFX-BioB-3_st 52.7698 A 0.868639
AFFX-BioC-5_st 31.7824 A 0.932322
AFFX-BioC-3_st 34.1732 A 0.631562
AFFX-BioDn-5_st 353.191 A 0.216524
AFFX-BioDn-3_st 370.037 A 0.0676785

Total number of rows: 12646

Table truncated, full table size 352 Kbytes.




Supplementary file Size Download File type/resource
GSM1675155_PN69_u95c.CEL.gz 2.5 Mb (ftp)(http) CEL
GSM1675155_PN69_u95cmas5.CHP.gz 4.4 Mb (ftp)(http) CHP
GSM1675155_PN69_u95cmas5.CHP.txt.gz 129.2 Kb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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