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Sample GSM1675282 Query DataSets for GSM1675282
Status Public on May 06, 2015
Title becic-00235: PT44: HG_U95C
Sample type RNA
 
Source name P44_prostate_cancer
Organism Homo sapiens
Characteristics Sex: male
age: --
diseasestate: Prostate_Adenocarcinoma
tumorgrading: Gleason_Score_7
diseasestaging: pT T4a, pN N0, pM MX
organismpart: Prostate
histology: ALI unknown, ECI multifocal, SVI no, SMI yes
prostatetissue: tumor
Biomaterial provider University of Pittsburgh, Department of Pathology
Extracted molecule total RNA
Extraction protocol See mage-tab files linked to series entry for additional details
Label biotin
Label protocol See mage-tab files linked to series entry for additional details
 
Hybridization protocol See mage-tab files linked to series entry for additional details
Scan protocol See mage-tab files linked to series entry for additional details
Data processing See mage-tab files linked to series entry for additional details
 
Submission date May 05, 2015
Last update date May 06, 2015
Contact name Mervi Heiskanen
E-mail(s) mervi.heiskanen@nih.gov
Phone 2402765175
Organization name NCI
Department CBIIT
Street address 9609 Medical Center Drive, 1W378
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platform ID GPL93
Series (1)
GSE68555 caArray_becic-00235: Gene expression alterations in prostate cancer predicting tumor aggression and preceding development of malignancy

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 100.508 A 0.737173
AFFX-MurIL10_at 40.8677 A 0.794268
AFFX-MurIL4_at 108.459 A 0.574038
AFFX-MurFAS_at 41.1802 A 0.672921
AFFX-BioB-5_at 5008.61 P 0.000258358
AFFX-BioB-M_at 10022.5 P 4.42873e-05
AFFX-BioB-3_at 5596.5 P 4.42873e-05
AFFX-BioC-5_at 6704.12 P 6.02111e-05
AFFX-BioC-3_at 4745.22 P 4.42873e-05
AFFX-BioDn-5_at 5326.64 P 4.42873e-05
AFFX-BioDn-3_at 26578.3 P 6.02111e-05
AFFX-CreX-5_at 65865.2 P 4.42873e-05
AFFX-CreX-3_at 103277 P 4.42873e-05
AFFX-BioB-5_st 44.6468 A 0.5
AFFX-BioB-M_st 370.788 A 0.382599
AFFX-BioB-3_st 373.509 A 0.425962
AFFX-BioC-5_st 22.001 A 0.957038
AFFX-BioC-3_st 153.794 A 0.455413
AFFX-BioDn-5_st 408.842 A 0.147939
AFFX-BioDn-3_st 544.734 P 0.00556451

Total number of rows: 12646

Table truncated, full table size 350 Kbytes.




Supplementary file Size Download File type/resource
GSM1675282_PT44_u95c.CEL.gz 2.4 Mb (ftp)(http) CEL
GSM1675282_PT44_u95cmas5.CHP.gz 4.3 Mb (ftp)(http) CHP
GSM1675282_PT44_u95cmas5.CHP.txt.gz 129.5 Kb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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