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Sample GSM1675319 Query DataSets for GSM1675319
Status Public on May 06, 2015
Title becic-00235: PT57: HG_U95C
Sample type RNA
 
Source name P57_prostate_cancer
Organism Homo sapiens
Characteristics Sex: male
age: --
diseasestate: Prostate_Adenocarcinoma
tumorgrading: Gleason_Score_7
diseasestaging: pT T2b, pN N0, pM MX
organismpart: Prostate
histology: ALI unknown, ECI no, SVI no, SMI yes
prostatetissue: tumor
Biomaterial provider University of Pittsburgh, Department of Pathology
Extracted molecule total RNA
Extraction protocol See mage-tab files linked to series entry for additional details
Label biotin
Label protocol See mage-tab files linked to series entry for additional details
 
Hybridization protocol See mage-tab files linked to series entry for additional details
Scan protocol See mage-tab files linked to series entry for additional details
Data processing See mage-tab files linked to series entry for additional details
 
Submission date May 05, 2015
Last update date May 06, 2015
Contact name Mervi Heiskanen
E-mail(s) mervi.heiskanen@nih.gov
Phone 2402765175
Organization name NCI
Department CBIIT
Street address 9609 Medical Center Drive, 1W378
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platform ID GPL93
Series (1)
GSE68555 caArray_becic-00235: Gene expression alterations in prostate cancer predicting tumor aggression and preceding development of malignancy

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 68.2808 A 0.749204
AFFX-MurIL10_at 65.0937 A 0.659339
AFFX-MurIL4_at 132.289 A 0.300606
AFFX-MurFAS_at 36.8313 A 0.617401
AFFX-BioB-5_at 1400.17 P 0.000855711
AFFX-BioB-M_at 2602.51 P 0.000340305
AFFX-BioB-3_at 1397.48 P 0.000258358
AFFX-BioC-5_at 5644.33 P 0.000126798
AFFX-BioC-3_at 4248.46 P 7.00668e-05
AFFX-BioDn-5_at 4366.35 P 6.02111e-05
AFFX-BioDn-3_at 23857.3 P 7.00668e-05
AFFX-CreX-5_at 45388 P 4.42873e-05
AFFX-CreX-3_at 77064.5 P 4.42873e-05
AFFX-BioB-5_st 78.8645 A 0.48511
AFFX-BioB-M_st 80.9457 A 0.672921
AFFX-BioB-3_st 79.7693 A 0.824672
AFFX-BioC-5_st 59.6174 A 0.876428
AFFX-BioC-3_st 18.7512 A 0.724854
AFFX-BioDn-5_st 557.638 A 0.195266
AFFX-BioDn-3_st 553 P 0.0309764

Total number of rows: 12646

Table truncated, full table size 351 Kbytes.




Supplementary file Size Download File type/resource
GSM1675319_PT57_u95c.CEL.gz 2.5 Mb (ftp)(http) CEL
GSM1675319_PT57_u95cmas5.CHP.gz 4.4 Mb (ftp)(http) CHP
GSM1675319_PT57_u95cmas5.CHP.txt.gz 128.9 Kb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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