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Sample GSM1675331 Query DataSets for GSM1675331
Status Public on May 06, 2015
Title becic-00235: PT62: HG_U95C
Sample type RNA
 
Source name P62_prostate_cancer
Organism Homo sapiens
Characteristics Sex: male
age: --
diseasestate: Prostate_Adenocarcinoma
tumorgrading: Gleason_Score_7
diseasestaging: pT T3a, pN N0, pM MX
organismpart: Prostate
histology: ALI unknown, ECI yes, SVI no, SMI no
prostatetissue: tumor
Biomaterial provider University of Pittsburgh, Department of Pathology
Extracted molecule total RNA
Extraction protocol See mage-tab files linked to series entry for additional details
Label biotin
Label protocol See mage-tab files linked to series entry for additional details
 
Hybridization protocol See mage-tab files linked to series entry for additional details
Scan protocol See mage-tab files linked to series entry for additional details
Data processing See mage-tab files linked to series entry for additional details
 
Submission date May 05, 2015
Last update date May 06, 2015
Contact name Mervi Heiskanen
E-mail(s) mervi.heiskanen@nih.gov
Phone 2402765175
Organization name NCI
Department CBIIT
Street address 9609 Medical Center Drive, 1W378
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platform ID GPL93
Series (1)
GSE68555 caArray_becic-00235: Gene expression alterations in prostate cancer predicting tumor aggression and preceding development of malignancy

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 98.7713 A 0.672921
AFFX-MurIL10_at 154.383 A 0.470241
AFFX-MurIL4_at 147.535 A 0.102165
AFFX-MurFAS_at 178.91 A 0.227636
AFFX-BioB-5_at 2701.6 P 0.000856509
AFFX-BioB-M_at 4475.71 P 8.14279e-05
AFFX-BioB-3_at 2356.14 P 0.000195116
AFFX-BioC-5_at 3506.31 P 0.000146581
AFFX-BioC-3_at 2251.15 P 0.000258358
AFFX-BioDn-5_at 2381.06 P 0.000146581
AFFX-BioDn-3_at 14714.8 P 0.000126798
AFFX-CreX-5_at 34810.4 P 4.42873e-05
AFFX-CreX-3_at 55852.6 P 4.42873e-05
AFFX-BioB-5_st 265.561 A 0.205732
AFFX-BioB-M_st 136.226 A 0.52976
AFFX-BioB-3_st 83.6398 A 0.824672
AFFX-BioC-5_st 44.4293 A 0.852061
AFFX-BioC-3_st 25.028 A 0.617401
AFFX-BioDn-5_st 364.367 A 0.313723
AFFX-BioDn-3_st 750.592 P 0.0200219

Total number of rows: 12646

Table truncated, full table size 351 Kbytes.




Supplementary file Size Download File type/resource
GSM1675331_PT62_u95c.CEL.gz 2.6 Mb (ftp)(http) CEL
GSM1675331_PT62_u95cmas5.CHP.gz 4.5 Mb (ftp)(http) CHP
GSM1675331_PT62_u95cmas5.CHP.txt.gz 128.7 Kb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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