NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1675435 Query DataSets for GSM1675435
Status Public on May 06, 2015
Title becic-00235: PD003: HG_U95C
Sample type RNA
 
Source name D003_normal_prostate
Organism Homo sapiens
Characteristics Sex: male
age: 50
diseasestate: Normal
tumorgrading: --
diseasestaging: --
organismpart: Prostate
histology: at least 60% glandular no pathological alterations
prostatetissue: normal
Biomaterial provider University of Pittsburgh, Department of Pathology
Extracted molecule total RNA
Extraction protocol See mage-tab files linked to series entry for additional details
Label biotin
Label protocol See mage-tab files linked to series entry for additional details
 
Hybridization protocol See mage-tab files linked to series entry for additional details
Scan protocol See mage-tab files linked to series entry for additional details
Data processing See mage-tab files linked to series entry for additional details
 
Submission date May 05, 2015
Last update date May 06, 2015
Contact name Mervi Heiskanen
E-mail(s) mervi.heiskanen@nih.gov
Phone 2402765175
Organization name NCI
Department CBIIT
Street address 9609 Medical Center Drive, 1W378
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platform ID GPL93
Series (1)
GSE68555 caArray_becic-00235: Gene expression alterations in prostate cancer predicting tumor aggression and preceding development of malignancy

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 27.6225 A 0.957038
AFFX-MurIL10_at 33.167 A 0.749204
AFFX-MurIL4_at 14.3836 A 0.941556
AFFX-MurFAS_at 81.2463 A 0.559354
AFFX-BioB-5_at 2001.41 P 0.000581214
AFFX-BioB-M_at 3747.13 P 4.42873e-05
AFFX-BioB-3_at 1936.34 P 0.000146581
AFFX-BioC-5_at 5885.44 P 7.00668e-05
AFFX-BioC-3_at 4809.06 P 5.16732e-05
AFFX-BioDn-5_at 4203.96 P 4.42873e-05
AFFX-BioDn-3_at 27125.9 P 7.00668e-05
AFFX-CreX-5_at 50133.6 P 4.42873e-05
AFFX-CreX-3_at 73137.2 P 4.42873e-05
AFFX-BioB-5_st 42.2416 A 0.544587
AFFX-BioB-M_st 69.4635 A 0.699394
AFFX-BioB-3_st 50.9664 A 0.876428
AFFX-BioC-5_st 39.7879 A 0.916408
AFFX-BioC-3_st 73.9416 A 0.672921
AFFX-BioDn-5_st 434.1 A 0.165861
AFFX-BioDn-3_st 557.565 A 0.0629293

Total number of rows: 12646

Table truncated, full table size 352 Kbytes.




Supplementary file Size Download File type/resource
GSM1675435_PD003_u95c.CEL.gz 2.5 Mb (ftp)(http) CEL
GSM1675435_PD003_u95cmas5.CHP.gz 4.4 Mb (ftp)(http) CHP
GSM1675435_PD003_u95cmas5.CHP.txt.gz 129.1 Kb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap