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Sample GSM1675465 Query DataSets for GSM1675465
Status Public on May 06, 2015
Title becic-00235: PD013: HG_U95C
Sample type RNA
 
Source name D013_normal_prostate
Organism Homo sapiens
Characteristics Sex: male
age: 51
diseasestate: Normal
tumorgrading: --
diseasestaging: --
organismpart: Prostate
histology: at least 60% glandular no pathological alterations
prostatetissue: normal
Biomaterial provider University of Pittsburgh, Department of Pathology
Extracted molecule total RNA
Extraction protocol See mage-tab files linked to series entry for additional details
Label biotin
Label protocol See mage-tab files linked to series entry for additional details
 
Hybridization protocol See mage-tab files linked to series entry for additional details
Scan protocol See mage-tab files linked to series entry for additional details
Data processing See mage-tab files linked to series entry for additional details
 
Submission date May 05, 2015
Last update date May 06, 2015
Contact name Mervi Heiskanen
E-mail(s) mervi.heiskanen@nih.gov
Phone 2402765175
Organization name NCI
Department CBIIT
Street address 9609 Medical Center Drive, 1W378
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platform ID GPL93
Series (1)
GSE68555 caArray_becic-00235: Gene expression alterations in prostate cancer predicting tumor aggression and preceding development of malignancy

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 40.0283 A 0.824672
AFFX-MurIL10_at 97.9903 A 0.544587
AFFX-MurIL4_at 36.8281 A 0.804734
AFFX-MurFAS_at 33.0994 A 0.804734
AFFX-BioB-5_at 644.089 P 0.00401721
AFFX-BioB-M_at 1996.67 P 0.000126798
AFFX-BioB-3_at 929.647 P 0.0125468
AFFX-BioC-5_at 3418.91 P 0.000146581
AFFX-BioC-3_at 2595.44 P 7.00668e-05
AFFX-BioDn-5_at 1982.24 P 0.000146581
AFFX-BioDn-3_at 13348 P 7.00668e-05
AFFX-CreX-5_at 27673.6 P 4.42873e-05
AFFX-CreX-3_at 48872.8 P 4.42873e-05
AFFX-BioB-5_st 21.9095 A 0.724871
AFFX-BioB-M_st 57.3006 A 0.891021
AFFX-BioB-3_st 54.8656 A 0.937071
AFFX-BioC-5_st 37.8233 A 0.897835
AFFX-BioC-3_st 29.4307 A 0.868639
AFFX-BioDn-5_st 196.962 A 0.382599
AFFX-BioDn-3_st 411.41 A 0.123572

Total number of rows: 12646

Table truncated, full table size 350 Kbytes.




Supplementary file Size Download File type/resource
GSM1675465_PD013_u95c.CEL.gz 2.4 Mb (ftp)(http) CEL
GSM1675465_PD013_u95cmas5.CHP.gz 4.2 Mb (ftp)(http) CHP
GSM1675465_PD013_u95cmas5.CHP.txt.gz 130.4 Kb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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