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Sample GSM1675468 Query DataSets for GSM1675468
Status Public on May 06, 2015
Title becic-00235: PD014: HG_U95C
Sample type RNA
 
Source name D014_normal_prostate
Organism Homo sapiens
Characteristics Sex: male
age: 24
diseasestate: Normal
tumorgrading: --
diseasestaging: --
organismpart: Prostate
histology: at least 60% glandular no pathological alterations
prostatetissue: normal
Biomaterial provider University of Pittsburgh, Department of Pathology
Extracted molecule total RNA
Extraction protocol See mage-tab files linked to series entry for additional details
Label biotin
Label protocol See mage-tab files linked to series entry for additional details
 
Hybridization protocol See mage-tab files linked to series entry for additional details
Scan protocol See mage-tab files linked to series entry for additional details
Data processing See mage-tab files linked to series entry for additional details
 
Submission date May 05, 2015
Last update date May 06, 2015
Contact name Mervi Heiskanen
E-mail(s) mervi.heiskanen@nih.gov
Phone 2402765175
Organization name NCI
Department CBIIT
Street address 9609 Medical Center Drive, 1W378
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platform ID GPL93
Series (1)
GSE68555 caArray_becic-00235: Gene expression alterations in prostate cancer predicting tumor aggression and preceding development of malignancy

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 234.339 A 0.51489
AFFX-MurIL10_at 130.963 A 0.544587
AFFX-MurIL4_at 125.649 A 0.340661
AFFX-MurFAS_at 122.544 A 0.686277
AFFX-BioB-5_at 830.034 P 0.0166701
AFFX-BioB-M_at 1399.4 P 0.00556451
AFFX-BioB-3_at 1031.74 P 0.0239288
AFFX-BioC-5_at 4018.58 P 0.000224668
AFFX-BioC-3_at 2769.88 P 7.00668e-05
AFFX-BioDn-5_at 2173.59 P 0.000972149
AFFX-BioDn-3_at 15342.8 P 0.000146581
AFFX-CreX-5_at 27689.7 P 4.42873e-05
AFFX-CreX-3_at 39625.9 P 4.42873e-05
AFFX-BioB-5_st 275.622 A 0.455413
AFFX-BioB-M_st 187.638 A 0.60308
AFFX-BioB-3_st 71.4313 A 0.860518
AFFX-BioC-5_st 32.2977 A 0.949771
AFFX-BioC-3_st 51.0999 A 0.843268
AFFX-BioDn-5_st 281.351 A 0.327079
AFFX-BioDn-3_st 858.113 P 0.0239288

Total number of rows: 12646

Table truncated, full table size 349 Kbytes.




Supplementary file Size Download File type/resource
GSM1675468_PD014_u95c.CEL.gz 2.4 Mb (ftp)(http) CEL
GSM1675468_PD014_u95cmas5.CHP.gz 4.3 Mb (ftp)(http) CHP
GSM1675468_PD014_u95cmas5.CHP.txt.gz 130.0 Kb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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