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Sample GSM1848927 Query DataSets for GSM1848927
Status Public on Aug 13, 2015
Title p53-/-MEF (old)_rep1
Sample type RNA
 
Source name p53-/-MEF (passage 7)
Organism Mus musculus
Characteristics cell type: p53-/- MEF (passage 7)
strain: C57/BL6N
Growth protocol mouse embryonic fibroblast & p53-/-mouse embryonic fibroblast (normal culture condition), HCT116 &HCT116 p53null with or without Ectoposide
Extracted molecule total RNA
Extraction protocol Total RNA was isolated using TRIZOL reagent according to manufacturer's instruction.
Label Cy3
Label protocol Cy3- cRNA were prepared with the Illumina TotalPrep™ RNA amplification kit for Illumina arrays.
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Arrays were scanned on an Illumina BeadArray Reader following the standard Illumina scanning protocol.
Description rep1
Data processing The data were background subtracted and normalized using Illumina GenomeStudio
 
Submission date Aug 12, 2015
Last update date Feb 02, 2016
Contact name Dong-Hoon Jin
E-mail(s) inno183@amc.seoul.kr
Phone 82-2-3010-2643
Organization name Asan Medical Center
Street address 88 Olympicro-43gil, Songpa-gu
City Seoul
ZIP/Postal code 138-736
Country South Korea
 
Platform ID GPL18752
Series (1)
GSE71980 Foxp3 is a key downstream regulator of p53-mediated cellular senescence

Data table header descriptions
ID_REF
VALUE Illumina GenomeStudio software computed quantile normalized signal intensity
3999926027 F.Detection Pval
3999926027 F.BEAD_STDERR
3999926027 F.Avg_NBEADS

Data table
ID_REF VALUE 3999926027 F.Detection Pval 3999926027 F.BEAD_STDERR 3999926027 F.Avg_NBEADS
0610005C13RIK -5.83141 0.5480769 3.770128 55
0610005I04 11.39232 0.2019231 4.191489 48
0610006I08RIK 4309.645 0 234.0067 43.5
0610006L08RIK -11.07827 0.7467949 2.806741 64
0610007C21RIK 10618.26 0 367.5843 49.33333
0610007J10RIK 3225.122 0 121.3842 50
0610007L01RIK 666.7308 0.0500984 41.63363 42.66667
0610007N19RIK 3027.605 0.04006731 146.9327 54.66667
0610007P08RIK 83.81852 0.001083886 9.028311 47.75
0610007P14RIK 3528.035 0 117.2721 45.66667
0610007P22RIK 439.3608 1.63E-09 24.34645 55
0610008C08RIK 6.601421 0.2617521 4.571494 40
0610008F07RIK 15.48071 0.1613248 4.115891 59
0610009B14RIK 24.52861 0.08653846 5.697919 47
0610009B22RIK 1268.804 0 55.88235 40
0610009D07RIK 106.517 0.04368192 11.25311 44
0610009J05RIK 310.6803 0 15.24622 54
0610009L18RIK 123.9624 0.001068376 9.14099 44
0610009O04RIK 25.91967 0.07905983 5.073826 41
0610009O20RIK 757.8514 0 33.57857 50

Total number of rows: 30848

Table truncated, full table size 1185 Kbytes.




Supplementary file Size Download File type/resource
GSM1848927_3999926027_F_Grn.idat.gz 2.0 Mb (ftp)(http) IDAT
Processed data included within Sample table
Processed data are available on Series record

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