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Sample GSM198689 Query DataSets for GSM198689
Status Public on Jun 09, 2008
Title Fibrosarcoma induced spontaneously in C3H/He mouse, 3 days after gamma irradiation at 30 Gy (g_nfsa_30_3d_1)
Sample type RNA
 
Source name Murine tumor
Organism Mus musculus
Characteristics Fibrosarcoma developed spontaneously in C3H/He mouse etablished by Dr. L. Milas from the University of Texas, M. D. Anderson Cancer Center, Huston, USA
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol CodeLink Gene Expression System: Manual Labelled cRNA Target Preparation
 
Hybridization protocol CodeLink Gene Expression System: Single-Assay Bioarray Hybridization and Detection
Scan protocol Scanning CodeLink Bioarrays on Agilent G2565 microarray scanner
Description 3 days after gamma irradiation at 30 Gy
Data processing global median normalization
 
Submission date Jun 06, 2007
Last update date Jun 02, 2008
Contact name Kazunori Nojiri
Organization name National Institute of Radiological Sciences
Street address 4-9-1, Anagawa, Inage-ku
City Chiba
ZIP/Postal code 263-8555
Country Japan
 
Platform ID GPL2897
Series (1)
GSE11629 Gene expression profiles of four murine tumors after carbon-ion (C-ion) or gamma irradiation.

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 7204.4346 49.5011 G 73.9345 7285.4346 3736.0000 7734.8525 117 12.2052869796753 98.539087528731 80.1813 81.0000 11.6927 188 49.5011
1002 1 1991.7556 13.6852 G 21.0632 2072.7556 2610.0000 1416.0936 90 10.7047443389893 98.4063223691824 80.8297 81.0000 11.6042 188 13.6852
1003 1 26.9592 0.1852 G 1.0812 107.9592 105.0000 15.1563 49 7.89865398406982 99.8536271046804 80.7198 81.0000 12.5691 188 0.1852
1004 1 76.2542 0.5239 G 1.5880 158.2542 160.0000 27.2014 59 8.66724491119385 99.6552576289376 81.1703 82.0000 11.7702 188 0.5239
1005 1 23.7105 0.1629 G 1.0566 102.7105 102.0000 25.1332 38 6.95579624176025 97.2091067147298 78.8170 79.0000 12.1394 159 0.1629
1006 1 6.4000 0.0440 L 0.8780 86.4000 86.0000 15.1135 90 10.7047443389893 98.402560452971 80.1598 80.0000 12.2684 175 0.0440
1007 1 7017.3223 48.2155 G 70.3864 7099.3223 3931.0000 7509.9170 120 12.3607740402222 100.862176693279 81.6923 82.0000 12.5748 188 48.2155
1008 1 6585.6377 45.2494 G 68.4013 6664.6377 2874.0000 7210.7354 118 12.2573356628418 97.4344173676601 80.1429 79.0000 12.2896 188 45.2494
1010 1 599.1125 4.1165 G 6.9647 679.1125 803.0000 319.7871 80 10.0925302505493 97.5081115372834 80.3462 80.0000 11.6721 188 4.1165
1012 1 727.6579 4.9997 G 8.1055 808.6579 969.0000 415.2711 76 9.83698177337646 99.7669855163964 80.8352 81.0000 12.5113 188 4.9997
1013 1 61.7458 0.4243 G 1.4048 142.7458 137.0000 28.5696 59 8.66724491119385 101.616443178159 81.6209 81.0000 13.7443 188 0.4243
1014 1 6690.0171 45.9666 G 69.5557 6770.0171 3143.0000 7252.0005 120 12.3607740402222 97.3323302039103 80.6429 80.0000 11.5549 188 45.9666
1015 1 6778.3555 46.5735 G 71.1563 6857.3555 3237.0000 7602.8550 123 12.5143299102783 96.3702956736329 80.1593 79.0000 11.5802 188 46.5735
1017 1 59.5079 0.4089 G 1.4283 139.5079 138.0000 22.6848 63 8.95623207092285 97.675374295965 78.7802 80.0000 11.7836 188 0.4089
1018 1 39.7826 0.2733 G 1.2232 118.7826 120.0000 20.0997 46 7.65303993225098 97.1074430955306 79.9670 79.0000 12.0716 188 0.2733
1019 1 105.9697 0.7281 G 1.8687 187.9697 187.0000 39.6855 66 9.16699600219727 100.590520962875 82.0994 82.0000 12.3937 187 0.7281
1020 1 58.9677 0.4052 G 1.4112 139.9677 135.0000 22.9164 62 8.88486671447754 99.1815107651137 80.4615 81.0000 12.1210 188 0.4052
1021 1 7103.8569 48.8100 G 71.0675 7185.8569 3644.0000 7567.4360 121 12.4121704101563 101.113106109623 81.4637 82.0000 12.7421 185 48.8100
1022 1 6633.1440 45.5758 G 67.7119 6713.1440 2941.0000 7372.9404 120 12.3607740402222 99.1427974576147 80.0549 80.0000 12.7619 188 45.5758
1024 1 11.7742 0.0809 L 0.9186 90.7742 89.0000 16.4997 31 6.2825493812561 98.8187302245028 79.9111 79.0000 13.2125 186 0.0809

Total number of rows: 36227

Table truncated, full table size 4693 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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