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Sample GSM198731 Query DataSets for GSM198731
Status Public on Jun 09, 2008
Title SCC induced spontaneously in C3H/He mouse, 3 days after gamma irradiation at 30 Gy (g_nrs1_30_3d_1)
Sample type RNA
 
Source name Murine tumor
Organism Mus musculus
Characteristics Squamous cell carcinoma developed spontaneously in C3H/He mouse etablished by National Institute of Radiological Science, Chiba, Japan
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol CodeLink Gene Expression System: Manual Labelled cRNA Target Preparation
 
Hybridization protocol CodeLink Gene Expression System: Single-Assay Bioarray Hybridization and Detection
Scan protocol Scanning CodeLink Bioarrays on Agilent G2565 microarray scanner
Description 3 days after gamma irradiation at 30 Gy
Data processing global median normalization
 
Submission date Jun 06, 2007
Last update date Jun 02, 2008
Contact name Kazunori Nojiri
Organization name National Institute of Radiological Sciences
Street address 4-9-1, Anagawa, Inage-ku
City Chiba
ZIP/Postal code 263-8555
Country Japan
 
Platform ID GPL2897
Series (1)
GSE11629 Gene expression profiles of four murine tumors after carbon-ion (C-ion) or gamma irradiation.

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 7256.6226 48.0294 G 75.6173 7335.6226 3326.0000 7772.9927 108 11.7264604568481 97.0098621685592 79.0385 79.0000 12.0066 188 48.0294
1002 1 2875.6279 19.0329 G 31.1861 2951.6279 3650.0000 1944.8798 86 10.4641580581665 94.645723511131 76.9286 76.0000 12.4305 188 19.0329
1003 1 38.9074 0.2575 G 1.2365 114.9074 113.0000 22.3957 54 8.29185962677002 92.9292157870873 76.2346 76.0000 11.2861 168 0.2575
1004 1 80.6557 0.5338 G 1.6635 158.6557 159.0000 31.7056 61 8.81292343139648 95.3749130651233 78.4725 78.0000 11.5833 188 0.5338
1005 1 1107.0632 7.3273 G 12.0820 1188.0632 1580.0000 697.0026 79 10.0292530059814 98.3335906834876 81.5275 81.0000 11.5557 188 7.3273
1006 1 20.3778 0.1349 G 1.0313 96.3778 97.0000 12.6496 45 7.56939744949341 93.4562661068136 76.2500 76.0000 11.6375 178 0.1349
1007 1 7772.8774 51.4464 G 77.0536 7854.8774 4842.0000 7864.2437 108 11.7264604568481 101.940448938014 81.5440 82.0000 13.2936 188 51.4464
1008 1 7407.9907 49.0313 G 77.2850 7484.9907 4284.0000 7845.6943 111 11.8882122039795 96.8491610581897 78.2418 77.0000 13.2328 188 49.0313
1010 1 1159.7094 7.6758 G 13.1942 1236.7094 1527.0000 733.1033 86 10.4641580581665 93.7310329429535 76.8187 77.0000 11.1540 188 7.6758
1012 1 1064.1948 7.0436 G 11.6307 1144.1948 1378.0000 640.5293 77 9.90148735046387 98.3773254196907 79.8571 80.0000 12.2515 188 7.0436
1013 1 45.8871 0.3037 G 1.2824 123.8871 125.0000 22.1520 62 8.88486671447754 96.6073219038936 78.3681 78.0000 12.4049 188 0.3037
1014 1 7488.4766 49.5640 G 78.0019 7566.4766 3991.0000 7768.5967 109 11.7806243896484 97.0036997731779 78.8077 78.0000 12.6691 188 49.5640
1015 1 7663.4785 50.7223 G 80.9050 7741.4785 4576.0000 8306.9941 119 12.3091630935669 95.6860346385173 78.8297 78.0000 11.7907 188 50.7223
1017 1 57.7833 0.3825 G 1.4307 132.7833 132.0000 21.8121 60 8.74038791656494 92.8073252194188 75.9780 75.0000 11.8715 188 0.3825
1018 1 90.1406 0.5966 G 1.7442 167.1406 175.0000 34.6716 64 9.02703380584717 95.8271804780296 77.1264 77.0000 12.5515 188 0.5966
1019 1 285.7105 1.8910 G 3.7885 361.7105 413.0000 155.2089 76 9.83698177337646 95.4768001837637 77.5604 76.0000 12.9845 188 1.8910
1020 1 24.8333 0.1644 G 1.0724 102.8333 103.0000 15.5648 48 7.81764030456543 95.8922378546817 77.7143 78.0000 11.9282 188 0.1644
1021 1 7601.7280 50.3136 G 79.8921 7680.7280 4947.0000 8185.1108 116 12.1530151367188 96.1387246407481 78.7033 79.0000 11.4258 188 50.3136
1022 1 7598.2358 50.2905 G 76.8176 7678.2358 5196.0000 7723.6372 108 11.7264604568481 99.9540879403772 79.9286 80.0000 13.3027 160 50.2905
1024 1 14.6944 0.0973 L 0.9625 88.6944 87.0000 15.4089 36 6.7702751159668 92.151174052168 75.3626 74.0000 12.1008 188 0.0973

Total number of rows: 36227

Table truncated, full table size 4692 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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