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GEO accession:
Sample GSM214540
Query DataSets for GSM214540
Status
Public on Mar 15, 2008
Title
Human leiomyosarcoma cell line_SKUT1B_NSP
Sample type
genomic
Source name
cell line
Organism
Homo sapiens
Characteristics
cell line was from mesodermal tumor (mixed), grade III
Extracted molecule
genomic DNA
Extraction protocol
Phenol-Chroloform extraction
Label
biotin
Label protocol
Affymetrix 500K mapping assay protocol
Hybridization protocol
Affymetrix 500K mapping assay protocol
Scan protocol
SNP arrays were scanned using Affymetrix GeneChip scanner 3000-7G
Description
SNP genotyping data (NSP) from SKUT1B
Data processing
Data Analysis workflow for GeneChip® Human Mapping 250K Arrays using GCOS and GTYPE
Submission date
Aug 01, 2007
Last update date
Aug 14, 2011
Contact name
Xueying Mao
E-mail(s)
x.mao@qmul.ac.uk
Organization name
Queen Mary
Street address
Charterhouse Square
City
London
ZIP/Postal code
EC1M 6BQ
Country
United Kingdom
Platform ID
GPL3718
Series (1)
GSE8649
High-resolution genetic analysis of cancer cell lines with near normal karyotypes
Data table header descriptions
ID_REF
VALUE
Genotypes: AA, AB, BB, No Call
CONFIDENCE
RAS1
Relative allele signal for the data in the first probe group
RAS2
Relative allele signal for the data in the second probe group
P-VALUE AA
P-VALUE AB
P-VALUE BB
P-VALUE NO CALL
Data table
ID_REF
VALUE
CONFIDENCE
RAS1
RAS2
P-VALUE AA
P-VALUE AB
P-VALUE BB
P-VALUE NO CALL
AFFX-5Q-123
No Call
0
0
0
0
0
0
0
AFFX-5Q-456
No Call
0
0
0
0
0
0
0
AFFX-5Q-789
No Call
0
0
0
0
0
0
0
AFFX-5Q-ABC
No Call
0
0
0
0
0
0
0
AFFX-barcodeA
No Call
0
0
0
0
0
0
0
AFFX-barcodeB
No Call
0
0
0
0
0
0
0
AFFX-barcodeC
No Call
0
0
0
0
0
0
0
AFFX-barcodeD
No Call
0
0
0
0
0
0
0
AFFX-barcodeE
No Call
0
0
0
0
0
0
0
AFFX-barcodeF
No Call
0
0
0
0
0
0
0
AFFX-barcodeG
No Call
0
0
0
0
0
0
0
AFFX-barcodeH
No Call
0
0
0
0
0
0
0
AFFX-barcodeI
No Call
0
0
0
0
0
0
0
AFFX-barcodeJ
No Call
0
0
0
0
0
0
0
AFFX-barcodeK
No Call
0
0
0
0
0
0
0
AFFX-barcodeL
No Call
0
0
0
0
0
0
0
AFFX-barcodeM
No Call
0
0
0
0
0
0
0
AFFX-barcodeN
No Call
0
0
0
0
0
0
0
AFFX-barcodeO
No Call
0
0
0
0
0
0
0
AFFX-barcodeP
No Call
0
0
0
0
0
0
0
Total number of rows:
262338
Table truncated, full table size
20233 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM214540.CEL.gz
27.0 Mb
(ftp)
(http)
CEL
GSM214540.CHP.gz
617.2 Kb
(ftp)
(http)
CHP
Processed data provided as supplementary file
Processed data included within Sample table
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