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Sample GSM241770 Query DataSets for GSM241770
Status Public on Nov 10, 2007
Title Gene expression in Peyers patches after orogatral Yersinia enterocolitica infection, one day after infection
Sample type RNA
 
Source name Peyers patches
Organism Mus musculus
Characteristics Five C57BL/6 mice were infected for 24 with 10 million Yersinia enterocolitica strain WA-314. Pyers patches were isolated, pooled and RNA was isolated
Treatment protocol Standard affymetrix procedure
Extracted molecule total RNA
Extraction protocol Rneasy minikit (Qiagen, Hilden)
Label Affymetrix
Label protocol Affymetrix
 
Hybridization protocol Affymetrix
Scan protocol Affymetrix
Description Affymetrix
Data processing Analysis wit Affymetrix microarray suite 5.0 and Data mining tool 3.0
 
Submission date Nov 08, 2007
Last update date Aug 14, 2011
Contact name Erwin Bohn
E-mail(s) erwin.bohn@med.uni-tuebingen.de
Phone 00-49-70712981525
Fax 00-49-7071294972
Organization name University of Tuebingen
Department Institutefor Medical Microbiology and Hygiene
Street address Elfriede-Aulhorn-Strasse 6
City Tuebingen
ZIP/Postal code 72076
Country Germany
 
Platform ID GPL81
Series (1)
GSE9558 Gene expression analysis of Peyers patches after infection of C57BL/6 mice with Yersinia enterocolitica

Data table header descriptions
ID_REF
VALUE Signal intensity
ABS_CALL Call (Present, Absent, Marginal)
DETECTION P-VALUE p-value of ABS_CALL

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 5.61942 A 0.910522
AFFX-MurIL10_at 5.66518 A 0.617401
AFFX-MurIL4_at 21.2395 A 0.250796
AFFX-MurFAS_at 32.5477 A 0.250796
AFFX-BioB-5_at 273.583 P 0.00159257
AFFX-BioB-M_at 526.865 P 4.42873e-05
AFFX-BioB-3_at 246.297 P 5.16732e-05
AFFX-BioC-5_at 748.002 P 0.00010954
AFFX-BioC-3_at 567.682 P 4.42873e-05
AFFX-BioDn-5_at 532.019 P 4.42873e-05
AFFX-BioDn-3_at 3885.74 P 9.4506e-05
AFFX-CreX-5_at 6166.38 P 4.42873e-05
AFFX-CreX-3_at 10649.6 P 4.42873e-05
AFFX-BioB-5_st 14.6595 A 0.5
AFFX-BioB-M_st 43.6365 A 0.425962
AFFX-BioB-3_st 37.1298 A 0.760937
AFFX-BioC-5_st 9.72271 A 0.824672
AFFX-BioC-3_st 2.85478 A 0.699394
AFFX-BioDn-5_st 62.3998 A 0.185131
AFFX-BioDn-3_st 41.3529 A 0.262827

Total number of rows: 12488

Table truncated, full table size 361 Kbytes.




Supplementary file Size Download File type/resource
GSM241770.CEL.gz 1.7 Mb (ftp)(http) CEL
GSM241770.CHP.gz 2.0 Mb (ftp)(http) CHP
Processed data included within Sample table

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